Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50230 115 / 7e-29 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 114 / 2e-28 Leucine-rich repeat protein kinase family protein (.1.2) AT2G26730 112 / 1e-27 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 105 / 2e-25 Leucine-rich repeat protein kinase family protein (.1) AT1G73066 104 / 4e-25 Leucine-rich repeat family protein (.1) AT5G24100 103 / 1e-24 Leucine-rich repeat protein kinase family protein (.1) AT5G67200 100 / 1e-23 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 100 / 2e-23 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 100 / 2e-23 Leucine-rich repeat protein kinase family protein (.1) AT2G45340 99 / 3e-23 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019429 [exp] 221 / 2e-71 AT1G60630 114 / 2e-28 Leucine-rich repeat protein kinase family protein (.1) Lus10042135 [exp] 179 / 2e-51 AT2G26730 335 / 4e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10002360 [exp] 174 / 8e-50 AT2G26730 337 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10032162 [exp] 169 / 7e-48 AT2G26730 321 / 1e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10014525 [exp] 168 / 2e-47 AT2G26730 321 / 2e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10039422 [exp] 152 / 8e-42 AT5G58300 306 / 3e-95 Leucine-rich repeat protein kinase family protein (.1.2) Lus10041991 [exp] 118 / 2e-31 AT1G48480 281 / 2e-90 receptor-like kinase 1 (.1) Lus10021383 [exp] 115 / 7e-29 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032351 [exp] 113 / 6e-28 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073500 [exp] 188 / 3e-55 AT2G26730 341 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) Potri.012G078100 [exp] 176 / 8e-51 AT2G26730 215 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 123 / 1e-31 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 116 / 3e-29 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 113 / 6e-28 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.014G002700 [exp] 109 / 9e-27 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 108 / 3e-26 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.008G144900 [exp] 107 / 4e-26 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 107 / 4e-26 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 107 / 5e-26 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10030067 pacid=23172564 polypeptide=Lus10030067 locus=Lus10030067.g ID=Lus10030067.BGIv1.0 annot-version=v1.0 ATGGCTCCAGTTCAAATAGTCTTCCTGCTCTTCGTCTCACTATCAACTCTAATCCCACCATCAAACTCCGAAACCGACTCCGTAAAGCAGTCACTGATCA AATTCATGGACAAACTATCAAGCGGAGACAGCAATTTCACAACCCAGAATCTAGGCTGGAACATGGCATCCGACCCTTGTCAATCCAACCAATCCAGTTG GCGTGGAGTGGACTGCGACGACAACAAATCAGTTACGTCGATAATCCTTTCCGGGTTCCAATTTTCAGGAACTCTGGACCCTGAACTACTCTGTTCCTCA GCCAAGTCACTGACCGTGCTTTGGCTGGAAAACAACACCATTTCCGGACAAATTCCAGAATCCATAGCCACCTGTTCGAGCTTACTCATCCTGGATCTGT ACAACAATAGCCTTTCAGGGCCGATTCCAAATTCAATCGTTCGGTTGAGTAACCTGACAGGACTGGTGATTTCGTATAACAAAGTCTCTGGCAAGATTCC TCAAGGCTTGGCTGAAGTTCTGCGCCTAACATACTTTCTGGCGGAAGGCAACAGTCTCACCGGGTCGATTCCAGGTTTTGATAGTCAGATTATGGAAAGG TTGAATGTATCAAACAACAATTTGAGCGGGGCAATTCCTGAAGGGCTAGGAGAAAAATTTGGAGCTAATCGATTTATTGGGAATCCTGGTTTATGCGGGA AGCCGCTAGCGAATTCTTGCACAGTTTCAGGACCCGAACCTGCTCCGAATCAAGAAGAAAATAGCAGTTGTAAAGTAGGGATCGAGAAATGGGCTGTGAT GGTTTTAACCATAGGGTTCTCACTTCTTCTATTTGGAAGTGTCCATTGA
AA sequence Show only first row Show all	>Lus10030067 pacid=23172564 polypeptide=Lus10030067 locus=Lus10030067.g ID=Lus10030067.BGIv1.0 annot-version=v1.0 MAPVQIVFLLFVSLSTLIPPSNSETDSVKQSLIKFMDKLSSGDSNFTTQNLGWNMASDPCQSNQSSWRGVDCDDNKSVTSIILSGFQFSGTLDPELLCSS AKSLTVLWLENNTISGQIPESIATCSSLLILDLYNNSLSGPIPNSIVRLSNLTGLVISYNKVSGKIPQGLAEVLRLTYFLAEGNSLTGSIPGFDSQIMER LNVSNNNLSGAIPEGLGEKFGANRFIGNPGLCGKPLANSCTVSGPEPAPNQEENSSCKVGIEKWAVMVLTIGFSLLLFGSVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50230			Leucine-rich repeat protein ki...		Lus10030067 [exp]	0	1
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10014376 [exp]	5.1	0.8614
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10020516 [exp]	12.6	0.8476
AT5G24010			Protein kinase superfamily pro...		Lus10027509 [exp]	18.3	0.7814
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	18.7	0.8115
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	22.1	0.8082
AT1G23390			Kelch repeat-containing F-box ...		Lus10013033 [exp]	24.2	0.8547
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	26.7	0.8314
AT5G12300			Calcium-dependent lipid-bindin...		Lus10036036 [exp]	28.0	0.8497
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	29.8	0.8370
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10023719 [exp]	31.7	0.8081

Compare expression of checked genes

Lus10030067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.