Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49290 368 / 3e-113 ATRLP56 receptor like protein 56 (.1) AT1G58190 353 / 1e-107 AtRLP9 receptor like protein 9 (.1.2) AT2G25470 347 / 2e-105 AtRLP21 receptor like protein 21 (.1) AT3G53240 340 / 6e-103 AtRLP45 receptor like protein 45 (.1) AT1G74190 337 / 3e-101 AtRLP15 receptor like protein 15 (.1) AT1G74170 333 / 2e-99 AtRLP13 receptor like protein 13 (.1) AT1G74180 329 / 3e-98 AtRLP14 receptor like protein 14 (.1) AT1G07390 324 / 7e-97 AtRLP1 receptor like protein 1 (.1.2.3) AT1G54470 242 / 3e-67 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT2G34930 223 / 5e-61 disease resistance family protein / LRR family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042381 [exp] 427 / 1e-134 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 356 / 2e-108 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10006948 [exp] 240 / 2e-67 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016402 [exp] 231 / 4e-65 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10042239 [exp] 214 / 3e-57 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10032335 [exp] 198 / 2e-52 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024737 [exp] 197 / 3e-52 AT2G34930 920 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 197 / 4e-52 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10004313 [exp] 195 / 9e-52 AT2G33060 335 / 5e-103 receptor like protein 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G118035 [exp] 587 / 0 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G120700 [exp] 582 / 0 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.018G118062 [exp] 562 / 0 AT1G74190 421 / 1e-129 receptor like protein 15 (.1) Potri.018G117927 [exp] 552 / 0 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.001G063700 [exp] 512 / 3e-168 AT2G25470 357 / 9e-109 receptor like protein 21 (.1) Potri.003G013200 [exp] 486 / 4e-157 AT2G25470 453 / 6e-144 receptor like protein 21 (.1) Potri.018G145522 [exp] 483 / 5e-157 AT2G25470 338 / 6e-102 receptor like protein 21 (.1) Potri.003G025100 [exp] 473 / 5e-152 AT1G74190 432 / 2e-135 receptor like protein 15 (.1) Potri.003G026308 [exp] 472 / 2e-150 AT1G74190 423 / 1e-130 receptor like protein 15 (.1) Potri.003G013700 [exp] 464 / 1e-147 AT2G25470 366 / 2e-110 receptor like protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030068 pacid=23172593 polypeptide=Lus10030068 locus=Lus10030068.g ID=Lus10030068.BGIv1.0 annot-version=v1.0 ATGGGAAAGCCGAGATTGGAATGGTTATTATTCCTCATCATCACCATCCTAGCTTACCCAATAAGCAAATCCAATGGGTTTGTGGAAGAAGAGAGATCAG CCCTTTTAGACCTCTATTCTTCCTTCATTCCAACTTCTCACCATCATCTTCATCAGCCTAATCCTCCCTCAGATTGCTGCTCCTGGAAAGGAATTGAATG CAAACAAACCACTGGAAGGGTCATCTCCATTGACTTGTTCTATCTCTTTATGTCCCTAAACTCAGAAGAAATAGTAGCAGACAGATACCTGAATGCTTCT CTGTTTCTTCCCTTTCAAGAACTGGCACATCTTTCCTTGTCCCATGGCGATCTTGTCGGCTTCGTTGACAACATTCGAGGTCTTGCAAAACTGAAAAATT TAGAACTCTTGGATTTGAGTTTCAACAGATTCAATTCCACCCTTCTTTCATCTATAGGATCTTTTCCGTCTTTGAAAATTCTAAGGTTACGAGGCAACAG GATGGACGGCATCAACGATCTAGCAGGCAAGACGTGTCCATATTCTCGATTATGCAATCTGAAGCAACTTCAAGTATTGGATCTATGGAACAACCATTTC ACAGGAGAGCTACCACAATGTCTATCAAACTTAACATCCCTTCAAGTTCTGGATCTCTCAGACAACCACTTCACAGGAAACATCTCTTTCTCCCCATTGA AATCTCTTGTCTCCATCAAAGAACTCAGGCTCACTTACAATTCCTTCCTAATCGCAATCTCCCTCTCACCATTTTTCAACCTCTCCAACCTCAAATTCCT CTACGCAGACCACAACCAGCTCATCTACAACGATGAACATCTTCCTCTTCCCTCTCCAACCTTCCAATTACAAATCCTTTACCTCTCTGCGCCCGATGGT CGCGGTGGGTCCCACTTCCCGGCGTTTCTGCATTACCAAAGCGACCTGCAAGCACTCCACATCACAAATGTACACATTCGAGATGATGGTTTCCCAACTT GGCTGCTTGACAACAATACTAACCTAAGAGAGCTTAACCTCGTTAATGATTCCCTCTCTGGTTTTGTACAGCTGAACCCACATAGGAACTTGACCCAGTT GGACATTTCAGATAACAACTTGGAAGGCCAAATTCCTCTCAACATTTCTTCTTATCTACCCAATTTGTTCTCCTTAGTCATGTCGAGCAACGCTTTCAAC GGTAGCGTTCCTGATTTTGTGGGCAGTGTGCTTATGGACTTGGACTTGTCTAACAACAAACTCTCTGGTGTATTGCCTGAAACGCTAGCGAAAAGTTGTC CTTCGTTACGGACTCTTGCTCTTTCGGGCAATGGTTTGGGAGGTCGAATTTTGGAGTTTGGGTTGAGTGGATTGATGACTTTGAGATTGGATCGGAATAA GTTTGTTGGGGGGATTCCAATTGGGTTGTCTACTAGCACTGGATTGAACTTCTTGGATTTGAGTAGCAATAGGCTATCTGGTTCAATCCCTTTGAGGCTA TCCAACATGTCGTCCCTCGATGTTTTGGACCTCTCTTCCAACAATTTCGTTGGAGAACTACCTCGTGGGTTTCCTTCTCCGTGGATGACGCAGGTTTATC TTTCGAAGAACGGGCTCGTCGGACGATTGGAGATCGATGATTCGGTCGATGTGGAATATCAATTGTTAATATTTGACGTTAGTCACAACAATTTAACTGG ATCTGTACCTAGACGGATTGATAAGATGTCTAGACTAAGGTACATTCTTTTAAATGACAACAACTTCCAAAGTGAAATTCCATCAGGAATGTGCAAGCTA GAGCATTTGAGATTGATTGATTTCTCCAACAATATTTTATCCGGCTCAATCTTGCCATGCATCAAGACTCGTGCACATTGGACGAGACAGGAAGGTGACG ACGAGATTGGATTCTTGGATGCCGGTACCCCAGCTATCGAACCGATGGAGATTACAACAAAAGCTTTTCCTTACTCTTACCAGGGCCGGAACCTACTCCT CATGTCAGGAATCAACCTCGCAAACAATAACTTCACCGGTGAGATACCCGAGGAATTTGGGAATCTCACCACGATTAGACTCTTGAACCTATCTCATAAT AAGCTGACCGGAGCAATTCCGTCAACATTTTCGAGTCTAGAGCAAATGGAGAGTTTGGATATTTCTTACAACAATTTGACCGGATCGATTCCTGGTCAAC TCGTTGATCTTAACTCCTTGGCTGTTTTTAGCGTGGCTTACAACAACTTGAGTGGGAAGACACCGGAGAGGATAGCTCAGTTTGCTACATTCAACGAATA TTGCTACGATGGAAATCCATGTCTATGCGGATGGCCACTTGCTAGAAAATGTACTCCATCGGAGAGACCAACGCCGGCATTTCCGTCCAGGGCTGAAGAT TCAGACGATGGCGAGGTGGGGATCGACATGGAGGTTTTTGCGGGTAGCTTTACGGTGTCGTTTGGGATGGTGTTAGCGGCAATTGCGGCGGTGTTATACA TAAATGAGAACTGGAGAAGGGTTTGGTTTTACTATGTGGAAGTGGTGATGACTGGTTGCTATTATTTCATGGTTGACCACCTTCCTGTACCGGCCAAGTA CAGAGTTTTAGATTCTTCCTCTGGTTCTGGACTACTGTCTTGGTAG
AA sequence Show only first row Show all	>Lus10030068 pacid=23172593 polypeptide=Lus10030068 locus=Lus10030068.g ID=Lus10030068.BGIv1.0 annot-version=v1.0 MGKPRLEWLLFLIITILAYPISKSNGFVEEERSALLDLYSSFIPTSHHHLHQPNPPSDCCSWKGIECKQTTGRVISIDLFYLFMSLNSEEIVADRYLNAS LFLPFQELAHLSLSHGDLVGFVDNIRGLAKLKNLELLDLSFNRFNSTLLSSIGSFPSLKILRLRGNRMDGINDLAGKTCPYSRLCNLKQLQVLDLWNNHF TGELPQCLSNLTSLQVLDLSDNHFTGNISFSPLKSLVSIKELRLTYNSFLIAISLSPFFNLSNLKFLYADHNQLIYNDEHLPLPSPTFQLQILYLSAPDG RGGSHFPAFLHYQSDLQALHITNVHIRDDGFPTWLLDNNTNLRELNLVNDSLSGFVQLNPHRNLTQLDISDNNLEGQIPLNISSYLPNLFSLVMSSNAFN GSVPDFVGSVLMDLDLSNNKLSGVLPETLAKSCPSLRTLALSGNGLGGRILEFGLSGLMTLRLDRNKFVGGIPIGLSTSTGLNFLDLSSNRLSGSIPLRL SNMSSLDVLDLSSNNFVGELPRGFPSPWMTQVYLSKNGLVGRLEIDDSVDVEYQLLIFDVSHNNLTGSVPRRIDKMSRLRYILLNDNNFQSEIPSGMCKL EHLRLIDFSNNILSGSILPCIKTRAHWTRQEGDDEIGFLDAGTPAIEPMEITTKAFPYSYQGRNLLLMSGINLANNNFTGEIPEEFGNLTTIRLLNLSHN KLTGAIPSTFSSLEQMESLDISYNNLTGSIPGQLVDLNSLAVFSVAYNNLSGKTPERIAQFATFNEYCYDGNPCLCGWPLARKCTPSERPTPAFPSRAED SDDGEVGIDMEVFAGSFTVSFGMVLAAIAAVLYINENWRRVWFYYVEVVMTGCYYFMVDHLPVPAKYRVLDSSSGSGLLSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10030068 [exp]	0	1
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	6.5	0.8357
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10003738 [exp]	8.1	0.7977
AT1G75810			unknown protein		Lus10033134 [exp]	8.2	0.8151
AT5G02090			unknown protein		Lus10024357 [exp]	11.1	0.8203
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	17.7	0.8038
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	20.4	0.8126
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	21.9	0.7920
AT2G22680		WAVH1	WAV3 homolog 1, Zinc finger (C...		Lus10003485 [exp]	22.6	0.7631
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Lus10021551 [exp]	23.3	0.7658
AT1G23390			Kelch repeat-containing F-box ...		Lus10029128 [exp]	26.2	0.8120

Compare expression of checked genes

Lus10030068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.