Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20110 184 / 6e-59 Dynein light chain type 1 family protein (.1) AT1G23220 95 / 6e-25 Dynein light chain type 1 family protein (.1) AT3G16120 77 / 2e-18 Dynein light chain type 1 family protein (.1) AT1G52240 77 / 2e-18 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) AT4G27360 74 / 3e-17 Dynein light chain type 1 family protein (.1) AT4G15930 73 / 1e-16 Dynein light chain type 1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014484 [exp] 355 / 4e-126 AT5G20110 191 / 2e-61 Dynein light chain type 1 family protein (.1) Lus10034609 [exp] 112 / 1e-31 AT1G23220 181 / 4e-60 Dynein light chain type 1 family protein (.1) Lus10021793 [exp] 103 / 5e-28 AT1G23220 176 / 6e-58 Dynein light chain type 1 family protein (.1) Lus10004252 [exp] 110 / 1e-27 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1) Lus10025794 [exp] 78 / 1e-18 AT1G52240 172 / 1e-57 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) Lus10031734 [exp] 78 / 1e-18 AT1G23220 100 / 6e-29 Dynein light chain type 1 family protein (.1) Lus10035868 [exp] 75 / 2e-17 AT1G52240 174 / 2e-58 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) Lus10038566 [exp] 71 / 1e-15 AT4G27360 157 / 5e-51 Dynein light chain type 1 family protein (.1) Lus10011443 [exp] 68 / 6e-15 AT1G52240 164 / 2e-54 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067800 [exp] 129 / 5e-36 AT5G20110 142 / 3e-41 Dynein light chain type 1 family protein (.1) Potri.010G108700 [exp] 115 / 1e-32 AT1G23220 187 / 2e-62 Dynein light chain type 1 family protein (.1) Potri.008G133000 [exp] 115 / 1e-32 AT1G23220 204 / 3e-69 Dynein light chain type 1 family protein (.1) Potri.003G108700 [exp] 99 / 5e-26 AT5G20110 116 / 4e-33 Dynein light chain type 1 family protein (.1) Potri.001G124700 [exp] 98 / 1e-25 AT5G20110 116 / 3e-33 Dynein light chain type 1 family protein (.1) Potri.011G120400 [exp] 92 / 3e-23 AT1G23220 112 / 1e-32 Dynein light chain type 1 family protein (.1) Potri.001G401400 [exp] 87 / 2e-21 AT1G23220 109 / 2e-31 Dynein light chain type 1 family protein (.1) Potri.001G407900 [exp] 81 / 2e-19 AT4G27360 126 / 5e-39 Dynein light chain type 1 family protein (.1) Potri.011G126400 [exp] 79 / 1e-18 AT4G27360 117 / 2e-35 Dynein light chain type 1 family protein (.1) Potri.003G052800 [exp] 76 / 4e-18 AT1G52240 151 / 3e-49 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01221 [flax] [poplar] Dynein_light Dynein light chain type 1
Representative CDS sequence Show only first row Show all	>Lus10030069 pacid=23172584 polypeptide=Lus10030069 locus=Lus10030069.g ID=Lus10030069.BGIv1.0 annot-version=v1.0 ATGAATTCTCAGGAGAAGAGAAAAAAGGGGTTCCTGATGAGATTCTACAAGTTTGGATCCAGTAGTAGCAATACATTGTCAAAGTCTGAACCACCACCAC CACCAGAAGCTCATGTGGTGCTTCCAAGTATAAAGACAGTGCTGAATAGTCCACTTTCCATAAGGGCGACCCCATCATATGAAGAAACTGTGGTAAGGAC TGTTCATGAAACAGTGATTCCGGCCAGGCACGGATTAGAAGTTCGAAGAGGGCTGGACGTGATCGAGAAGGGGAGGAAGTCAGTCTCACATGTAGAAACA AACTTGGAATCAGTAGCATCATTTCTTCAGGTGAAGGTTTTGGTGACTGACATGCCTGGATTTATGCAAGTTCATGCCTTTAGGTGTGCCAGGAGGACTT TTGATAGCTTGGAGAAATTCAGCTCTAAGCATATTGCTTATAACATCAAGAAGGGAATGGGAATTTGGATTAGTGATCCAACAGGCCATGTGGAGTTTGA CAAGCTGTATGGACCTTCCTGGCATTGTATTGTGGGCTCCAGTTTTGGGTCATTTGTAACACATTCAACTGGCTGTTTTCTTTACTTTTCAATTGAGAAG CTTTACGTATTAGTCTTCAAAACCAAAGTTCAGAAATCTGCAGATTGTGCAGATTGA
AA sequence Show only first row Show all	>Lus10030069 pacid=23172584 polypeptide=Lus10030069 locus=Lus10030069.g ID=Lus10030069.BGIv1.0 annot-version=v1.0 MNSQEKRKKGFLMRFYKFGSSSSNTLSKSEPPPPPEAHVVLPSIKTVLNSPLSIRATPSYEETVVRTVHETVIPARHGLEVRRGLDVIEKGRKSVSHVET NLESVASFLQVKVLVTDMPGFMQVHAFRCARRTFDSLEKFSSKHIAYNIKKGMGIWISDPTGHVEFDKLYGPSWHCIVGSSFGSFVTHSTGCFLYFSIEK LYVLVFKTKVQKSADCAD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20110			Dynein light chain type 1 fami...		Lus10030069 [exp]	0	1
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	5.3	0.8769
AT4G35210			Arabidopsis protein of unknown...		Lus10025122 [exp]	6.2	0.8779
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10002272 [exp]	6.9	0.8586
AT2G37195			unknown protein		Lus10019937 [exp]	7.7	0.8704
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	8.1	0.8786
					Lus10025501 [exp]	8.1	0.8828
AT2G18570			UDP-Glycosyltransferase superf...		Lus10024037 [exp]	14.1	0.8222
AT5G02280			SNARE-like superfamily protein...		Lus10024390 [exp]	16.6	0.8087
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	17.0	0.8609
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001016 [exp]	19.3	0.8599

Compare expression of checked genes

Lus10030069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.