Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80160 247 / 8e-85 GLYI7 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT1G15380 229 / 7e-78 GLYI4 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) AT2G28420 172 / 2e-55 GLYI8 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) AT5G57040 54 / 3e-09 Lactoylglutathione lyase / glyoxalase I family protein (.1) AT2G32090 52 / 7e-09 Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014480 [exp] 337 / 2e-120 AT1G80160 244 / 1e-83 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10005324 [exp] 169 / 2e-53 AT2G28420 245 / 2e-83 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10039579 [exp] 167 / 8e-53 AT2G28420 248 / 2e-84 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10025971 [exp] 158 / 2e-49 AT1G15380 165 / 3e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10014269 [exp] 158 / 2e-49 AT1G15380 166 / 2e-52 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10017158 [exp] 54 / 3e-09 AT5G57040 254 / 7e-87 Lactoylglutathione lyase / glyoxalase I family protein (.1) Lus10006122 [exp] 47 / 9e-07 AT2G32090 199 / 3e-67 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10010552 [exp] 45 / 5e-06 AT2G32090 197 / 3e-66 Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Lus10021573 [exp] 43 / 3e-05 AT5G57040 163 / 2e-51 Lactoylglutathione lyase / glyoxalase I family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129200 [exp] 250 / 2e-86 AT1G80160 225 / 1e-76 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.001G171600 [exp] 245 / 6e-84 AT1G80160 270 / 6e-94 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G062400 [exp] 243 / 3e-83 AT1G80160 261 / 2e-90 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.003G009000 [exp] 183 / 3e-59 AT1G80160 190 / 8e-62 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.004G223300 [exp] 181 / 3e-58 AT1G80160 187 / 1e-60 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.007G015100 [exp] 177 / 7e-57 AT1G15380 167 / 7e-53 glyoxylase I 4, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.005G117000 [exp] 171 / 1e-54 AT1G80160 166 / 2e-52 glyoxylase I 7, Lactoylglutathione lyase / glyoxalase I family protein (.1.2) Potri.009G055500 [exp] 164 / 1e-51 AT2G28420 229 / 1e-77 glyoxylase I 8, Lactoylglutathione lyase / glyoxalase I family protein (.1) Potri.018G056200 [exp] 49 / 3e-07 AT5G57040 253 / 2e-86 Lactoylglutathione lyase / glyoxalase I family protein (.1) Potri.010G087000 [exp] 47 / 6e-07 AT2G32090 189 / 3e-63 Lactoylglutathione lyase / glyoxalase I family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10030070 pacid=23172617 polypeptide=Lus10030070 locus=Lus10030070.g ID=Lus10030070.BGIv1.0 annot-version=v1.0 ATGGTGATGGGAATTGAAAACCCTCTGCAGCTGAAGTCATTGAATCACATCTCCCTGGTCTGTCGATCCGTGGAGAAATCCCTCGAATTCTACCAGCACG TTCTTGGTTTCTTCCCCATCCGCCGCCCTGGCTCCTTCGACTTCGATGGCGCCTGGCTGTTCGGTTACGGAATCGGAATCCATTTGCTCCAGTCAGAGGA CCCAGAGAGCATGCCCAAAATCTGTGTCATCAACCCAAAAGACAACCACATCTCCTTCCAATGTGAGAGCATGGCGACGGTGGAGAAAAAGCTGAAAGAG ATGGAGATCGAGTACGTGAAAGGGCGGGTGGAGGAAGGAGGGATCTACGTGGATCAGCTATTCTTCCACGACCCAGATGGTTCCATGATTGAAATCTGCA ATTGCGACAATCTCCCAGTCGTCCCTCTCGCTGGAGAAGCTATTCGTTCTTGCTCTCTCATCAACTGCACCATCCAGCAGCAGCAGCAGCAGAAGGAGCT CTTGAACAAGCTCTGCAAATGA
AA sequence Show only first row Show all	>Lus10030070 pacid=23172617 polypeptide=Lus10030070 locus=Lus10030070.g ID=Lus10030070.BGIv1.0 annot-version=v1.0 MVMGIENPLQLKSLNHISLVCRSVEKSLEFYQHVLGFFPIRRPGSFDFDGAWLFGYGIGIHLLQSEDPESMPKICVINPKDNHISFQCESMATVEKKLKE MEIEYVKGRVEEGGIYVDQLFFHDPDGSMIEICNCDNLPVVPLAGEAIRSCSLINCTIQQQQQQKELLNKLCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10030070 [exp]	0	1
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10002134 [exp]	2.6	0.9493
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10019299 [exp]	2.8	0.9624
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10027755 [exp]	5.7	0.9468
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10006826 [exp]	5.7	0.9490
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	5.8	0.9590
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	9.6	0.9541
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	9.9	0.9448
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10035538 [exp]	10.0	0.9390
AT1G19530			unknown protein		Lus10002540 [exp]	11.7	0.9530
AT2G37380		MAKR3	MEMBRANE-ASSOCIATED KINASE REG...		Lus10025286 [exp]	12.7	0.9479

Compare expression of checked genes

Lus10030070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.