Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55270 139 / 3e-39 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 50 / 2e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 44 / 2e-05 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G61350 42 / 0.0001 SKIP4 SKP1 interacting partner 4 (.1) AT3G59940 42 / 0.0001 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G43710 41 / 0.0003 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 40 / 0.0008 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G24610 40 / 0.001 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G39756 39 / 0.001 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001071 [exp] 216 / 9e-69 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 214 / 4e-68 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10043282 [exp] 116 / 3e-34 AT1G55270 66 / 2e-14 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 48 / 2e-06 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 47 / 2e-06 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 42 / 0.0002 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 40 / 0.0007 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217700 [exp] 140 / 1e-39 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 140 / 1e-39 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 53 / 2e-08 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G083200 [exp] 45 / 2e-05 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.013G104300 [exp] 43 / 6e-05 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.017G000700 [exp] 42 / 0.0001 AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G147000 [exp] 41 / 0.0003 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030072 pacid=23172604 polypeptide=Lus10030072 locus=Lus10030072.g ID=Lus10030072.BGIv1.0 annot-version=v1.0 ATGGCGGATCCTTGGAGGATGCGAGGTACTGAGAGGATGAATCAACCTCCTCTGGTTGACACAACAGCTTGCTTATGTAGAGTAGATGCAGGACTTAAAA CAGTGGCTGGTGCGAAAAAGTACGTCCCAGGAAGTAAGCTTTGTCTTCAACCAGATATAAGACCATCCATCCACCCAACTAGACAGAAGCCGTCTCGTGG TGATAGGAACAGGAACCAGTCCCCTTTGCTTCCTGGACTCCCTGATGATCTTGCCATTGCTTGCCTCATTCGTGTCCCGAGGGCTGAGCATCGAAAGCTT AGGCTAGTCTGCAAAAGATGCAAGTTACATCTAGGCAATTCGTGCGCGTTGGAAGCAGCTGCGCTGGTTCCACTCAATGGAAAGTTGTGCATCATCAGAA ACAACATGAGCATATCAGTAGTCGATGTCTCGAAATCTGAAGATCTTGTTGGGGAAGCTCTTGCTGAACATTTGTGGGAAACCCTTTCAGGGAGAGGACA GTTCAAGACTCTGGTCTCCAACCTCTGGTCGAGCCTTGCTGGAAGGAACCGCCTGAGAAGTCACATTGTTCACTGCCAAGTTCTCCAGGCATAA
AA sequence Show only first row Show all	>Lus10030072 pacid=23172604 polypeptide=Lus10030072 locus=Lus10030072.g ID=Lus10030072.BGIv1.0 annot-version=v1.0 MADPWRMRGTERMNQPPLVDTTACLCRVDAGLKTVAGAKKYVPGSKLCLQPDIRPSIHPTRQKPSRGDRNRNQSPLLPGLPDDLAIACLIRVPRAEHRKL RLVCKRCKLHLGNSCALEAAALVPLNGKLCIIRNNMSISVVDVSKSEDLVGEALAEHLWETLSGRGQFKTLVSNLWSSLAGRNRLRSHIVHCQVLQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55270			Galactose oxidase/kelch repeat...		Lus10030072 [exp]	0	1
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	3.3	0.9046
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	9.3	0.8987
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10035135 [exp]	14.1	0.8905
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004346 [exp]	14.9	0.8894
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	15.2	0.8945
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	17.9	0.8939
AT3G05390			unknown protein		Lus10004494 [exp]	20.6	0.8751
AT5G57770			Plant protein of unknown funct...		Lus10015501 [exp]	21.0	0.8729
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	21.9	0.8457
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10034776 [exp]	26.1	0.8604

Compare expression of checked genes

Lus10030072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.