Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25260 344 / 4e-121 Ribosomal protein L10 family protein (.1) AT3G11250 57 / 2e-09 Ribosomal protein L10 family protein (.1) AT3G09200 57 / 2e-09 Ribosomal protein L10 family protein (.1.2) AT2G40010 52 / 1e-07 Ribosomal protein L10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043280 [exp] 435 / 2e-157 AT1G25260 351 / 3e-124 Ribosomal protein L10 family protein (.1) Lus10019424 [exp] 410 / 2e-140 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10001072 [exp] 169 / 3e-54 AT1G25260 122 / 5e-36 Ribosomal protein L10 family protein (.1) Lus10014841 [exp] 49 / 9e-07 AT3G11250 489 / 6e-176 Ribosomal protein L10 family protein (.1) Lus10009887 [exp] 49 / 1e-06 AT3G11250 491 / 7e-176 Ribosomal protein L10 family protein (.1) Lus10009447 [exp] 47 / 6e-06 AT3G09200 431 / 1e-153 Ribosomal protein L10 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156300 [exp] 386 / 5e-138 AT1G25260 353 / 5e-125 Ribosomal protein L10 family protein (.1) Potri.001G460100 [exp] 384 / 4e-137 AT1G25260 352 / 1e-124 Ribosomal protein L10 family protein (.1) Potri.010G191200 [exp] 51 / 1e-07 AT3G09200 505 / 0.0 Ribosomal protein L10 family protein (.1.2) Potri.008G066300 [exp] 49 / 8e-07 AT2G40010 510 / 0.0 Ribosomal protein L10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00466 [flax] [poplar] Ribosomal_L10 Ribosomal protein L10
Representative CDS sequence Show only first row Show all	>Lus10030073 pacid=23172588 polypeptide=Lus10030073 locus=Lus10030073.g ID=Lus10030073.BGIv1.0 annot-version=v1.0 ATGCCGAAGTCCAAACGTAACCAAGCAGTGACTCTGTCGAAAACAAAGAAGAAAGGGAGAGAGCATAAAGAAATCATAGTGAACGCGATAAGGGACGCTG TGGAAAAGTACACTTCCATTTACGTGTTTGGCTTTGAGAACATGAGAAATCTCAAGTTCAAGGAGTTCAGAGAGCACCTTAAGACGAGCAGCAGGTTCTT CCTTGGTTCAAACAAAGTGATGCAGGTTGCTCTCGGTCGATCTATTGCTGATGAGCTCAGACCAGGAATCCGTAAAGCATCTAAGCTTCTACATGGAGAT GCTGGTCTAGTTTGTACGAACTTGCCCAAAGAAGAAATTGAAAGGTTATTCCGTGAATATGAAGATTATGACTTTGCACGGACTGGCAATAATGCCACTG AAAAGGTGGAACTCAAGGAAGGACCTCTTGACCAATTTACTCATGAAATGGAGCCCTATCTACGTAAACAAGGGTTGCCTGTTCGGCTGAACAAAGGTAC CGTGGAACTTATTTCAGACTTTGTTGTCTGTGAAGAAGGAAAGCCTTTGTCACCCGAATCAGCTCGAATACTGAGGCTGTTAGGCATTAAGATGGCAACC TTCCGGCTTAATTTAATCTGCAGATGGGGGTCAGAGGATTTTGAGCTGTATAAAGATGGACTTGATGAAGCTTCTGATATAGAATCGGCATGA
AA sequence Show only first row Show all	>Lus10030073 pacid=23172588 polypeptide=Lus10030073 locus=Lus10030073.g ID=Lus10030073.BGIv1.0 annot-version=v1.0 MPKSKRNQAVTLSKTKKKGREHKEIIVNAIRDAVEKYTSIYVFGFENMRNLKFKEFREHLKTSSRFFLGSNKVMQVALGRSIADELRPGIRKASKLLHGD AGLVCTNLPKEEIERLFREYEDYDFARTGNNATEKVELKEGPLDQFTHEMEPYLRKQGLPVRLNKGTVELISDFVVCEEGKPLSPESARILRLLGIKMAT FRLNLICRWGSEDFELYKDGLDEASDIESA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25260			Ribosomal protein L10 family p...		Lus10030073 [exp]	0	1
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	1.7	0.8962
AT4G18905			Transducin/WD40 repeat-like su...		Lus10015348 [exp]	5.8	0.8360
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	9.5	0.8392
AT3G23390			Zinc-binding ribosomal protein...		Lus10040983 [exp]	11.8	0.8561
AT3G19460			Reticulon family protein (.1.2...		Lus10014102 [exp]	12.9	0.8692
AT3G52040			unknown protein		Lus10039586 [exp]	13.8	0.8463
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	14.1	0.8509
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10025435 [exp]	15.2	0.8508
AT1G66510			AAR2 protein family (.1.2.3)		Lus10009118 [exp]	18.0	0.8143
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10012170 [exp]	21.0	0.8674

Compare expression of checked genes

Lus10030073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.