Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25570 383 / 7e-135 binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001073 [exp] 524 / 0 AT2G25570 395 / 7e-140 binding (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G219400 [exp] 404 / 2e-143 AT2G25570 379 / 3e-133 binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08238 [flax] [poplar] Sel1 Sel1 repeat
Representative CDS sequence Show only first row Show all	>Lus10030074 pacid=23172561 polypeptide=Lus10030074 locus=Lus10030074.g ID=Lus10030074.BGIv1.0 annot-version=v1.0 ATGCTGGGACGATCCTCCAAAAATATCGCTATCAATGTCTGCGCTCTTCGTCGTCTCCAATCCTATACTCCTCATAGGGAGCTCCACAGTAGGAACAAGA AGGCGATGGAGTTCATAGCCAAAGGTTGGAACGCTTTGAAGGAAGTCGACCGAGTGATTGATTACTGCGAGCTCCATGACCATCGTCTCATTCCTCACCT AAGAACTGCCAAGGAAAATTTTGAGCTGGCTTTGGAGGCTGACAATTCCAATACTCATGCTAGATATTGGTTGTCTAAATTGCATTTGAAATACCATGTT CCTGGTGCTTGTAAAGCTATAGGAGCTGCTTTGTTGGTGGAAGCTGCAGAGATGGGCGATGCAGATGCTCAATACGAATTGGGTTGTCGTTTGAGAGTGG AGAATGATTGGGTTCAGTCAGATCAACAAGCTTTCTATTATTTGGAGAAGGCCGTGGACCAGTTACATCCAGGCGCTTTATACCTCCTAGGTGCCGTATA CTTGACTGGGGATTGTGTAAAGAAAGACGTTGCCTCAGCCCTGTGGTGTTTCCATCGAGCATCAGAGAAGGGACACGCTGGTGCAGCAATAGCATATGGA TCTTTACTTCTTAGAGGTGAACAAGTCCCGGAAGCAATTACAAAACTAGAGATAAAAAGAGGAGCCCATGGCAGGAAAGCAAAGACAGATGAAAGTTCCG CTGGTTGGACGAGGCATCCGGTAGAAATGGCGAAACAACAGTTTGAAGCAGCTGCAAAAGCAGGGTGTGATCTGGGGCTGAAATGGCTGCAGAGAGTAGA GGAAGCAGAGGAACGTCTGGTTGCTGAAACAAGCAGCAGCTCCCAAGGTGGCGTTGTTCTCTCATCATAA
AA sequence Show only first row Show all	>Lus10030074 pacid=23172561 polypeptide=Lus10030074 locus=Lus10030074.g ID=Lus10030074.BGIv1.0 annot-version=v1.0 MLGRSSKNIAINVCALRRLQSYTPHRELHSRNKKAMEFIAKGWNALKEVDRVIDYCELHDHRLIPHLRTAKENFELALEADNSNTHARYWLSKLHLKYHV PGACKAIGAALLVEAAEMGDADAQYELGCRLRVENDWVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDVASALWCFHRASEKGHAGAAIAYG SLLLRGEQVPEAITKLEIKRGAHGRKAKTDESSAGWTRHPVEMAKQQFEAAAKAGCDLGLKWLQRVEEAEERLVAETSSSSQGGVVLSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25570			binding (.1.2.3)		Lus10030074 [exp]	0	1
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035160 [exp]	12.0	0.7034
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	22.4	0.6869
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	23.4	0.7016
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10012549 [exp]	54.0	0.5919
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030898 [exp]	58.7	0.6157
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10038994 [exp]	97.0	0.6481
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	98.5	0.6477
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	117.6	0.6302
AT3G58060			Cation efflux family protein (...		Lus10029304 [exp]	133.5	0.6136
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	135.0	0.6129

Compare expression of checked genes

Lus10030074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.