Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58570 596 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 585 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 578 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 347 / 4e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 342 / 6e-110 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G55150 335 / 1e-108 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 335 / 5e-107 DEAD box RNA helicase family protein (.1.2) AT3G06480 317 / 3e-96 DEAD box RNA helicase family protein (.1) AT1G31970 296 / 2e-93 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT2G33730 299 / 2e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001074 [exp] 760 / 0 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 600 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 587 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 585 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 583 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 528 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 509 / 5e-177 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 438 / 1e-150 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043334 [exp] 339 / 9e-109 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007900 [exp] 610 / 0 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 598 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 579 / 0 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 568 / 0 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G158000 [exp] 336 / 3e-108 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 336 / 3e-108 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 337 / 7e-108 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 332 / 2e-107 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 333 / 2e-106 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 333 / 1e-104 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10030075 pacid=23172627 polypeptide=Lus10030075 locus=Lus10030075.g ID=Lus10030075.BGIv1.0 annot-version=v1.0 ATGAGTTGGGACTTTCCCGGAGGAAGCAGTACCGGAGGTGGAGGCGGAGGCGGCGGCGGCCAACCGAACTACTCCTACAGGGGCGGTGGTGCAGGCGGTC GAGCTCGTCCTCAGCGAGGTCACTATGTTCCTCCATACCAACGGAACCTTGCTCCAACTCCTCAGAATGTTGCTTACGGTTACTCAGCGTACTCCAGTTC TGTGTACGCAGGCTCTCCTGCCTACCCTCAGTACCAGTACGGTGGCCGCTCTGTACCCTGCCAGCCGGATTATTTGATTCGAGGACGCGGGCGCGGAGGT GGAGGTAGAGTTACCGACGTGCCAGCGCTGGCGGAGAGCTTCGAGGAGATTGACTTGGAGGAACGGTTAATCGAAAACGTACGGAGGTGTAAATACACGA AGCCGACTCCGATCCAGAAGCACGCCATTCCGATTGCCGTCGCTGGTCGGGACCTGATGGCGTGTGCTCAGACTGGGTCCGGTAAGACCGCTGCCTTCTG CTTCCCTATAATTTCCAAGGTTTTGAAGAACGGACTCCAGTCGGGTCATGGTGGGACCCGGATGGCCCAGCCTTGTGCACTTATATTGTCTCCTACCAGG GAATTGTCCTGTCAGATTCACGAGGAGGCCAAGAAGTTTGCTTACAAAACTGGTGTTAAGATCGTTGTTGTGTACGGAGGCGCACCTATTCAACAGCAGC TTCACAACTTGGATAAGGGTGTTGACATACTGGTTGCTACTCCTGGACGCTTGGTTGACATGATTGAAAGAGGAAGAGTGTCCCTGAAGACAATTAAGCA CCTGGCTGTAGATGAAGCTGATAGGATGTTGGACATGGGATTTGAACCTCAGATTAGGAAGATTGTTCAGCAAATGGGGATGCCTCCGCCTGGCGAAAGG CAGACTATGCTTTTCAGTGCTACATTCCCTGACGAGATTCAGCGACTTGCATCTGATTTTTTATCCAACTACATCTTTCTATCTGTTGGGAGAGTGGGCT CGAGCACTGGGTTAATTTCTCAAAAAGTGGAATTTGTTCAAGATATGGATAAAAGATCTCACGTCATGAAACTTCTCCGTTCCCGGAAAACAAATGGCAA GACTGAATTGACACTGGTGTTTACTGAAACAAAGAAAGGTGCTGATGCCCTTGAGGACTACTTGTACAGGAATGGTTTTCCAGCAATAGCTATTCATGGT GACAAAGTGCAACCGGAGAGGGAGCGGGCATTGAGATCATTCAAATCAGGGGCAACTCCAATTATGGTGGCAACCGACGTTGCATCTCGAGGACTGGATA TCCCCAACGTTTCACATGTCATAAACTACGACATGCCAAAGGACATTGACGACTATGTTCACAGGATCGGTCGAACTGGACGAGCTGGTAAGTCTGGACA AGCAACAGCATTCTTCAGCGACAAGAACATGTCAATGGCAAAGCCGCTAATGGAGCTGATGAAGGAATCAAAGCAGGAAGTCCCTTCTTGGCTAAGTGAA TATGCAGAAAGTGACAACTCCTCTAGCTACGGCGGTGGTGGTGGTGGGCGTTACAAAAGATATGATGGAGGAGGTGGTAGCAGCCGACATGGTGGCTACG ATTATCGCAATGATTATTCAAGCAACAGCAGCTATGGCGGTTACAATACTGCTCCTTACTATGATAGTAATGCATATGCAGCAGCTTACACTGTCCCTAA TGCTGGTGGTCGTGGCTATGGGACTGAAGCAGTTGTAGCCTCTGGCTGGGATATGTAA
AA sequence Show only first row Show all	>Lus10030075 pacid=23172627 polypeptide=Lus10030075 locus=Lus10030075.g ID=Lus10030075.BGIv1.0 annot-version=v1.0 MSWDFPGGSSTGGGGGGGGGQPNYSYRGGGAGGRARPQRGHYVPPYQRNLAPTPQNVAYGYSAYSSSVYAGSPAYPQYQYGGRSVPCQPDYLIRGRGRGG GGRVTDVPALAESFEEIDLEERLIENVRRCKYTKPTPIQKHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISKVLKNGLQSGHGGTRMAQPCALILSPTR ELSCQIHEEAKKFAYKTGVKIVVVYGGAPIQQQLHNLDKGVDILVATPGRLVDMIERGRVSLKTIKHLAVDEADRMLDMGFEPQIRKIVQQMGMPPPGER QTMLFSATFPDEIQRLASDFLSNYIFLSVGRVGSSTGLISQKVEFVQDMDKRSHVMKLLRSRKTNGKTELTLVFTETKKGADALEDYLYRNGFPAIAIHG DKVQPERERALRSFKSGATPIMVATDVASRGLDIPNVSHVINYDMPKDIDDYVHRIGRTGRAGKSGQATAFFSDKNMSMAKPLMELMKESKQEVPSWLSE YAESDNSSSYGGGGGGRYKRYDGGGGSSRHGGYDYRNDYSSNSSYGGYNTAPYYDSNAYAAAYTVPNAGGRGYGTEAVVASGWDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	0	1
AT3G58570			P-loop containing nucleoside t...		Lus10001074 [exp]	1.4	0.8711
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	3.7	0.8429
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	4.2	0.8272
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	4.9	0.7984
AT1G14180			RING/U-box superfamily protein...		Lus10002316 [exp]	5.1	0.7829
AT5G05230			RING/U-box superfamily protein...		Lus10029029 [exp]	6.2	0.7694
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	7.0	0.8045
AT2G35390			Phosphoribosyltransferase fami...		Lus10040098 [exp]	12.0	0.8146
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	13.4	0.7524
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10042358 [exp]	18.0	0.7876

Compare expression of checked genes

Lus10030075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.