Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32400 396 / 2e-136 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G20240 199 / 3e-60 Mitochondrial substrate carrier family protein (.1) AT4G01100 160 / 2e-45 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G61810 154 / 4e-43 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G51050 157 / 7e-43 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT3G51870 150 / 3e-41 Mitochondrial substrate carrier family protein (.1) AT5G01500 149 / 2e-40 TAAC thylakoid ATP/ADP carrier (.1) AT3G53940 140 / 7e-38 Mitochondrial substrate carrier family protein (.1) AT5G07320 141 / 4e-37 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT2G37890 136 / 2e-36 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002902 [exp] 429 / 3e-149 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 425 / 1e-147 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10033351 [exp] 197 / 9e-59 AT3G20240 496 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10034806 [exp] 196 / 1e-58 AT3G20240 491 / 5e-175 Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 166 / 2e-46 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 163 / 1e-45 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 164 / 2e-45 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 163 / 5e-45 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 159 / 8e-45 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252100 [exp] 440 / 9e-154 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 426 / 3e-148 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.008G004100 [exp] 204 / 7e-62 AT3G20240 494 / 1e-176 Mitochondrial substrate carrier family protein (.1) Potri.010G253600 [exp] 164 / 1e-46 AT3G20240 388 / 6e-135 Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 161 / 9e-46 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 159 / 1e-44 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.015G108900 [exp] 161 / 2e-44 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 158 / 2e-44 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 157 / 5e-44 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.012G110700 [exp] 159 / 1e-43 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10030076 pacid=23172618 polypeptide=Lus10030076 locus=Lus10030076.g ID=Lus10030076.BGIv1.0 annot-version=v1.0 ATGGGTGAAGTTGTTCGGCGTAGAAACCAAGGCTTGACCTTCACTAGTTCCGGTGTTAAGGTCCAGCTTTTCCTTCAAGACACAACGTTACCTCCTCCTA AGCCTACCAATGCGTTTTTCGCCAGCGTCAATCAAGTTGGGAAGGGATTTGGGATTTCTTCAACCACCTCTTCTCCTCCTAATCCCGTGGAGAATCCCAA CGCCGCCTTGCTTAATATGCAGTTGAAGCTTGTCTCGATGGCCGAGCCTCCGCCGCAAGTTTTGACAGCTGAGAGCAACGGCGCTGCACTGCGGCTGGGT GAGGTTTTGGATGTGGCGGCCAAGGAAGAGGTTGTGTTAGCGGCGGCGACGAACAAGGGTAAAAAAAGTGGGTTCAAGTGGAGAATCAAGGTCAGGAATC CTGCTCTAAGGAGGCTGATCAGCGGAGGGATTGCTGGAGCTGTGTCCAGAACTGTTGTTGCTCCATTGGAGACTATAAGGACTCATTTGATGGTTGGGAG CTGTGGCCACTCCACTTTTGAAGTGTTTGATAACATTATGAAGTCTGAAGGTTGGACTGGTTTGTTCAGAGGCAATTTCGTTAATGTCATTCGGGTCGCC CCCAGCAAGGCTATTGAGCTATTTGCTTATGACACCGTTCTGAAGAACTTGACACCTGAACCTGGGAAGCAACCGCTATTGCCAATTCCTGCATCCTCAA TAGCCGGTGGTCTTGCTGGTGTTTGTTCCACCTTGTGCACTTATCCTCTCGAATTGCTCAAAACCAGACTCACAGTACAGAGAGGGGTATACGATAACCT ACTTGATGCGCTGGTGAAGATTGTCCGGGAAGAAGGGCCAGGGGAGCTTTACAGAGGTCTCACCCCTAGTCTAATAGGAGTGGTACCATATGCAGCAGCC AATTACTGGGCATATGACACGCTAAGGAAAGCATACAAGAAGGCATTCAAGAAGGAAGAAATCGGAAATGTGATGACCCTTCTTATCGGATCAGCAGCTG GTGCAATCTCGAGCACTGCCACTTTCCCCTTGGAGGTGGCAAGGAAGCAGATGCAGGCAGGGGCTCTAAACGGAGGACAGTACACTAGCATGCTCCATGC ATTGACCGGAATCCTTGAGAAGGAAGGATTGGGAGGTCTCTACAGAGGGTTGGGACCAAGCTGCCTGAAATTAGTCCCTGCTGCCGGAATCTCCTTCATG TGCTACGAAGCTTGCAAAAAGGTGTTGGTTGCAGAAGAGGAATCTTATGCAGAGAAGGCAGCAACAGCTTAA
AA sequence Show only first row Show all	>Lus10030076 pacid=23172618 polypeptide=Lus10030076 locus=Lus10030076.g ID=Lus10030076.BGIv1.0 annot-version=v1.0 MGEVVRRRNQGLTFTSSGVKVQLFLQDTTLPPPKPTNAFFASVNQVGKGFGISSTTSSPPNPVENPNAALLNMQLKLVSMAEPPPQVLTAESNGAALRLG EVLDVAAKEEVVLAAATNKGKKSGFKWRIKVRNPALRRLISGGIAGAVSRTVVAPLETIRTHLMVGSCGHSTFEVFDNIMKSEGWTGLFRGNFVNVIRVA PSKAIELFAYDTVLKNLTPEPGKQPLLPIPASSIAGGLAGVCSTLCTYPLELLKTRLTVQRGVYDNLLDALVKIVREEGPGELYRGLTPSLIGVVPYAAA NYWAYDTLRKAYKKAFKKEEIGNVMTLLIGSAAGAISSTATFPLEVARKQMQAGALNGGQYTSMLHALTGILEKEGLGGLYRGLGPSCLKLVPAAGISFM CYEACKKVLVAEEESYAEKAATA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10030076 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	3.2	0.8587
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	10.5	0.7826
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	15.1	0.7848
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	19.0	0.7807
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	19.8	0.8066
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	26.4	0.7918
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10028117 [exp]	28.8	0.7591
AT2G03667			Asparagine synthase family pro...		Lus10026669 [exp]	41.7	0.7062
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	44.9	0.7615
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10019603 [exp]	46.2	0.7607

Compare expression of checked genes

Lus10030076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.