Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 74 / 2e-17 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT4G30380 55 / 4e-10 EXLB2 Barwin-related endoglucanase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013118 [exp] 99 / 4e-27 AT4G30380 67 / 5e-15 Barwin-related endoglucanase (.1) Lus10033054 [exp] 99 / 9e-27 AT2G18660 56 / 1e-10 plant natriuretic peptide A (.1) Lus10019444 [exp] 93 / 1e-24 AT2G18660 68 / 3e-15 plant natriuretic peptide A (.1) Lus10042435 [exp] 79 / 3e-19 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10026232 [exp] 68 / 9e-15 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10019978 [exp] 65 / 7e-14 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10020130 [exp] 61 / 1e-11 AT2G18660 70 / 2e-15 plant natriuretic peptide A (.1) Lus10031759 [exp] 59 / 1e-11 AT2G18660 107 / 1e-30 plant natriuretic peptide A (.1) Lus10026931 [exp] 61 / 2e-11 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252200 [exp] 161 / 1e-51 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.018G029100 [exp] 160 / 1e-51 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G155000 [exp] 103 / 2e-28 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1) Potri.018G031901 [exp] 97 / 3e-26 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1) Potri.006G249500 [exp] 96 / 5e-26 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.006G179300 [exp] 93 / 6e-25 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G098200 [exp] 89 / 4e-23 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.018G101600 [exp] 88 / 6e-23 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.003G218300 [exp] 74 / 1e-17 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.006G176300 [exp] 65 / 4e-14 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10030078 pacid=23172543 polypeptide=Lus10030078 locus=Lus10030078.g ID=Lus10030078.BGIv1.0 annot-version=v1.0 ATGAGGACGGTCCACTATCACAACTCAACCTTGTTTGCAGTCGTCTGGCTGCTCATCTTATTATTATCTTCATTTCTAATAATCCCGCCCGCAGCCGCTG ACATTGGGACTGCTACCTCCTACGACCCTCCATATTTGCCAACAAAGTGCCGTGGGAATAGGCAAGACCAGTTCCCACAAGACGGGCATTTCCTGGCGGC TAGCGACGGCGTTTGGGACAACGGCGCAGCATGCGGGAGGAAGTACAGGGTTAGGTGCATCAGCGGCCTGAGGAGACCTTGCAAGGAGGATACTGTGGTG GCTCAGGTGGTCGATTTCTGCCGCGTAACTCCTTGTCCCACCACCTTTGTCCTCTCCAACAAAGCTTTCGACGCCATCTCCAAACTGCCCCATTCCAAGA TCAACATCGAATTTTCCCAGTATACATCGTTCACTCTTTCCATCGTCCACCATAACCATACATATGTACTCTAG
AA sequence Show only first row Show all	>Lus10030078 pacid=23172543 polypeptide=Lus10030078 locus=Lus10030078.g ID=Lus10030078.BGIv1.0 annot-version=v1.0 MRTVHYHNSTLFAVVWLLILLLSSFLIIPPAAADIGTATSYDPPYLPTKCRGNRQDQFPQDGHFLAASDGVWDNGAACGRKYRVRCISGLRRPCKEDTVV AQVVDFCRVTPCPTTFVLSNKAFDAISKLPHSKINIEFSQYTSFTLSIVHHNHTYVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	0	1
AT5G38200			Class I glutamine amidotransfe...		Lus10035996 [exp]	2.0	0.8762
AT5G59040		COPT3	copper transporter 3 (.1)		Lus10021107 [exp]	3.2	0.8115
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	6.6	0.8500
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018500 [exp]	8.2	0.8702
AT5G39150			RmlC-like cupins superfamily p...		Lus10003114 [exp]	8.8	0.8605
					Lus10039453 [exp]	8.9	0.8310
AT1G14220			Ribonuclease T2 family protein...		Lus10035882 [exp]	12.5	0.8042
					Lus10006216 [exp]	16.3	0.8129
					Lus10029831 [exp]	16.5	0.7911
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	18.9	0.7910

Compare expression of checked genes

Lus10030078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.