Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57340 383 / 1e-132 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G05750 275 / 5e-91 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G49060 205 / 6e-63 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT3G06778 71 / 5e-14 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 71 / 4e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 70 / 4e-13 DNAJ heat shock family protein (.1) AT2G20560 70 / 4e-13 DNAJ heat shock family protein (.1) AT1G59980 69 / 1e-12 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT4G39960 69 / 2e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G08970 69 / 2e-12 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019421 [exp] 488 / 1e-173 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10043277 [exp] 479 / 3e-168 AT3G57340 408 / 2e-140 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10006515 [exp] 206 / 5e-64 AT5G49060 300 / 8e-101 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10037502 [exp] 199 / 7e-61 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10002852 [exp] 77 / 5e-15 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10031336 [exp] 75 / 1e-14 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031908 [exp] 74 / 3e-14 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10000631 [exp] 73 / 6e-14 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 73 / 8e-14 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153700 [exp] 446 / 3e-157 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.010G013200 [exp] 199 / 2e-60 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.016G120000 [exp] 76 / 1e-14 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G194000 [exp] 74 / 2e-14 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 70 / 6e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 69 / 8e-13 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.010G035000 [exp] 68 / 1e-12 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 68 / 2e-12 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.015G035300 [exp] 68 / 3e-12 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.010G036200 [exp] 67 / 3e-12 AT1G24120 566 / 0.0 ARG1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF09320 [flax] [poplar] DUF1977 Domain of unknown function (DUF1977)
Representative CDS sequence Show only first row Show all	>Lus10030079 pacid=23172572 polypeptide=Lus10030079 locus=Lus10030079.g ID=Lus10030079.BGIv1.0 annot-version=v1.0 ATGGACGGGAACAAAGATGACGCGTTGAAGTGTTTGAGAATCGGCAAGGATGCCCTCGGATCTGGTGACAGAGCTCGCGCCGCGAAATTCTTCTCTAAAG CCCGCCGTCTCGATCCGACTCTACCTGTCGACGATCTTATGGCGGAGACGGAGAAGGAGCCTTCATCGTCGGCGGCATCTGATCAGACCACTGCCAATGG GCGGGCAAGTACCGAATCCAAGCTCCGACATCGGCCGACAGAGACTGCGGCTTCTTCTTCAGCTGCTTCATCATCGCCCACGTATACCGAGGAGCAAATG AACTTGGTAAGGCAAATTAAAAAGAAGAAAGATTACTATGAAATATTAGGATTGGAGAAGAATTGTAGTGTGGAAGATGTTCGTAAGGCGTATAGGAAGT TGTCCCTGAAAGTCCATCCTGATAAGAACCAGGCACCAGGTGCTGAGGACGCATTTAAGGCTATGTCGAAAGCGTTCCAATGTCTGAGTAATGAAGAGAA TAGGAAGAAGTATGATGTCACTGGTAGTGAAGAGCCTGTTTATGATAATAGACGAGCTCATAGGCATCATGGTGGAGGAGGGTTCCAAAACGGGTATTAC GATGATTTTGATGCTGACGAGATATTCAGGCAGTTTTTTTACGGAGGAAGTTCGCCGGGGACTACACAGTTCAGGTCTTTTAACTTTGGCGGTGGTGTGG GTCGTCCTAGAGCAGGTACAGCAGGCGATAATGGAGGATCCGGGCTCAACGTTCGTGCGCTGCTTCAGTTGCTACCAGTCGTGGTAATCTTCCTGATGAG TTTCCTGCCATCCTCGGATCCAGTTATCTACAAGCTGTCAGAGTCGTATCCTTACGAGTATAGGTACACCACGGAAAATGGTGTAAACTTTTATGTGAAG AGCAGTAACTGGTTCGAGCAGGAGTATCCGATTGGTAGCCAAAACAGGATACGGCTGGAACGGAAAGTTGAAAGGGACTATGTTGCGGTTCTTACTCAGA ATTGTAGGCATGAGTTGCAAAGGCAGCAGTGGGGATTTGTGAGGGAGACTCCTCACTGTGAGATGTTGCAGCAGTATCAATCTGGTGAACGTGCTGCCTG A
AA sequence Show only first row Show all	>Lus10030079 pacid=23172572 polypeptide=Lus10030079 locus=Lus10030079.g ID=Lus10030079.BGIv1.0 annot-version=v1.0 MDGNKDDALKCLRIGKDALGSGDRARAAKFFSKARRLDPTLPVDDLMAETEKEPSSSAASDQTTANGRASTESKLRHRPTETAASSSAASSSPTYTEEQM NLVRQIKKKKDYYEILGLEKNCSVEDVRKAYRKLSLKVHPDKNQAPGAEDAFKAMSKAFQCLSNEENRKKYDVTGSEEPVYDNRRAHRHHGGGGFQNGYY DDFDADEIFRQFFYGGSSPGTTQFRSFNFGGGVGRPRAGTAGDNGGSGLNVRALLQLLPVVVIFLMSFLPSSDPVIYKLSESYPYEYRYTTENGVNFYVK SSNWFEQEYPIGSQNRIRLERKVERDYVAVLTQNCRHELQRQQWGFVRETPHCEMLQQYQSGERAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10030079 [exp]	0	1
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	1.0	0.9166
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	2.8	0.9042
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	2.8	0.9133
AT4G19950			unknown protein		Lus10038358 [exp]	3.0	0.9126
AT3G02910			AIG2-like (avirulence induced ...		Lus10040635 [exp]	3.2	0.9016
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	4.6	0.8796
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	6.9	0.8822
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10038866 [exp]	7.7	0.8538
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007448 [exp]	7.8	0.7925
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	8.8	0.8532

Compare expression of checked genes

Lus10030079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.