Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52600 293 / 8e-103 Peptidase S24/S26A/S26B/S26C family protein (.1) AT3G15710 270 / 1e-93 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023131 [exp] 285 / 1e-99 AT1G52600 339 / 5e-121 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10011491 [exp] 255 / 8e-88 AT1G52600 307 / 9e-109 Peptidase S24/S26A/S26B/S26C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G062800 [exp] 292 / 2e-102 AT1G52600 350 / 2e-125 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.001G171200 [exp] 290 / 2e-101 AT1G52600 348 / 7e-125 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.018G005800 [exp] 274 / 3e-95 AT1G52600 289 / 3e-101 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.006G274900 [exp] 169 / 6e-55 AT1G52600 132 / 1e-40 Peptidase S24/S26A/S26B/S26C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF00717 [flax] [poplar] Peptidase_S24 Peptidase S24-like
Representative CDS sequence Show only first row Show all	>Lus10030080 pacid=23172556 polypeptide=Lus10030080 locus=Lus10030080.g ID=Lus10030080.BGIv1.0 annot-version=v1.0 ATGGGTTGGATCAGTGAGACAGTGGACTCCGTGAGATCGATTCAGATCAGGCAAGCTCTGTGTCACGCCATTACTCTCGGGATGGTAGTAACATCGGCGC TGATTCTGTGGAAAGGCCTAATGTGCATCACCGGCAGCGAATCTCCGGTCGTCGTCGTGCTTTCCGGGAGCATGGAACCCGGTTTCAAGCGGGGTGATAT CCTGTTTTTGTACATGAACAAAGATCCGATTCGTGCAGGAGACATTGTGGTGTTTAATGTGGAGGGTCGAGATATTCCTATAGTCCACCGTGTAATCGAG ATTCATCAGCAACGAAAACATGAGGAAATCGAGCTACTTACTAAAGGTGATGCAAATCCAATGGATGATAGGATTCTATATGCCGATGGGCAGCGATGGT TGAAGCCTCAGCATATAATGGGAAGAGCTGTTGGGTTCTTGCCTTATGTGGGTTGGGTGACGATTATAATGACTGAGAAGCCTATTCTTAAGTATATACT GGTTGGAGGATTGGGTTTGATGATATTGACCTCCAAGGATTAG
AA sequence Show only first row Show all	>Lus10030080 pacid=23172556 polypeptide=Lus10030080 locus=Lus10030080.g ID=Lus10030080.BGIv1.0 annot-version=v1.0 MGWISETVDSVRSIQIRQALCHAITLGMVVTSALILWKGLMCITGSESPVVVVLSGSMEPGFKRGDILFLYMNKDPIRAGDIVVFNVEGRDIPIVHRVIE IHQQRKHEEIELLTKGDANPMDDRILYADGQRWLKPQHIMGRAVGFLPYVGWVTIIMTEKPILKYILVGGLGLMILTSKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10030080 [exp]	0	1
AT1G48440			B-cell receptor-associated 31-...		Lus10040126 [exp]	3.5	0.8314
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10041198 [exp]	6.6	0.8365
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	7.1	0.8534
AT1G48440			B-cell receptor-associated 31-...		Lus10001080 [exp]	8.2	0.8158
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10026103 [exp]	10.2	0.7451
AT3G27250			unknown protein		Lus10014610 [exp]	13.0	0.7774
AT1G07400			HSP20-like chaperones superfam...		Lus10040722 [exp]	20.3	0.8075
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010189 [exp]	20.8	0.7821
AT3G13130			unknown protein		Lus10039066 [exp]	21.0	0.8034
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	24.5	0.8132

Compare expression of checked genes

Lus10030080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.