Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26690 717 / 0 Major facilitator superfamily protein (.1) AT1G12110 499 / 6e-171 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT3G21670 436 / 3e-146 Major facilitator superfamily protein (.1) AT3G54140 391 / 5e-129 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 385 / 8e-127 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 376 / 3e-123 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 373 / 7e-122 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G59740 350 / 7e-113 Major facilitator superfamily protein (.1) AT1G32450 325 / 5e-103 NRT1.5 nitrate transporter 1.5 (.1) AT1G68570 321 / 1e-101 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039782 [exp] 831 / 0 AT2G26690 851 / 0.0 Major facilitator superfamily protein (.1) Lus10018553 [exp] 805 / 0 AT2G26690 852 / 0.0 Major facilitator superfamily protein (.1) Lus10032252 [exp] 526 / 0 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10024614 [exp] 495 / 1e-169 AT1G12110 737 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10035317 [exp] 456 / 4e-154 AT3G21670 801 / 0.0 Major facilitator superfamily protein (.1) Lus10030006 [exp] 456 / 5e-154 AT3G21670 800 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 402 / 4e-133 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10024300 [exp] 390 / 2e-128 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040099 [exp] 388 / 1e-127 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111500 [exp] 531 / 0 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.002G225500 [exp] 461 / 8e-156 AT3G21670 736 / 0.0 Major facilitator superfamily protein (.1) Potri.014G157500 [exp] 441 / 4e-148 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 395 / 2e-130 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.005G233500 [exp] 395 / 7e-130 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 385 / 1e-126 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G029200 [exp] 384 / 6e-126 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 382 / 3e-125 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 380 / 6e-125 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 379 / 3e-124 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10030081 pacid=23172592 polypeptide=Lus10030081 locus=Lus10030081.g ID=Lus10030081.BGIv1.0 annot-version=v1.0 ATGTGTCAGGATGAGAAAAGGAGTTTGACAGTCCCAGATGCTGTAGATTACAAAGGTTTCCCCGCTGACAAGTCCAAAACTGGTGGTTGGGTGCCCGCTG CACTCATCTTAGGGATTGAGATAGTTGAGAGGCTTTCAACAATGGGAATAGCAGTGAACCTAGTGACATATCTGATAGGGACAATGCATATGCCAAGTGC AGCTTCTGCCAATTTCGTAACTGATTTCATGGGCACTTCTTTCCTCTTGTGTTTGCTGGGAGGCTTCCTTGCTGACACTTTCCTTGGAAGATTCAAGACC ATTGCTATTTTTTCTGCTGTCCAAGCACTTGGTACTGCAACTTTGGCAGTGGCCACTAAGCTTCCACAGCTGAGGCCACCACCATGCCACGCCAACAACC ACTCATGCACACAAGCAACTGGATTCCAAATGGGGTTTCTCTATATGGCACTGTACCTGATTGCACTGGGGACTGGTGGCCTGAAATCAAGTGTTTCAGG GTTTGGAACAGATCAATTCGACGAGAAAGACGAAAAGGAGAAGTCTCAGATGGCCTTTTTCTTCAACAGATTCTTTTTCTTCATCAGCTTGGGTACACTT ATGGCTGTGACAGTCCTGGTTTACATCCAGGACGAAGTAGGCCGCAGCTGGGCTTATGGGATTTGCTCAGCTTCAATGTTCATAGCCATTGTGATATTGT TGTCTGGAAGTAGGAAATACAGGTACAAGAAAAGCATGGGGAGCCCCATAGTCCATATCTTCCAAGTCATTGCAGCTTCCATTAGGAAGAGGAAACTGGA CCACCCTTATGATGATCTCAGCTTGTTGTATGAGAACACTCCTGAAGCTTCAAGGATTCAACATACTTCCCAATTCCAGTTGTTGGACAAGGCAGCCATT GTTGTGGAAGCAGACTTTGAGAATGGAAACGGTTCAGAACCAAACCCGTGGAAGCTATGCACGGTGACCCGGGTGGAAGAAGTGAAGATGATGGCCAAAT TGCTGCCAATTTGGGCCACAACCATCATATTCTGGACTGCTTATGCACAGATGATCACATTCTCAGTAGAGCAAGCTTCCACCATGGACAGATTTGTTGG GAGCTTCCAAATTCCAGCAGGGTCCCTCACTGTCTTCTTTGTGGCCGCTATTCTGCTCTCTCTTGCTGTCTATGACCGCTTGGTTATGCCCATCTGGAAG AAGTGGACTGGCAAACCAGGTTGGTTCACGATCTTGTCTCTCCTGACCGATTATTACAATGATCCAGGGTTCACCAACCTCCAGAGGATAGGCATGGGGT TGGCACTATCAACAATGGGGATGGCAGTGGCTGCAGTGGTTGAGACAAGGCGATTATCGGCAGCAGCCAAATCAACAGCAGCGACATCCAGCAATCCACA CCACCTCCAACTTTCAGTGTTCCTACTGATCCCACAGTTCCTGCTAGTGGGTTCAGGGGAGGCATTCATCTACACAGGGCAGCTGGACTTCTTCATAACT CAGTCTCCTAAAGGGATGAAGACCATGAGCACTGGACTTTTCCTAACTACGCTTTCCCTTGGCTTCTTCATCAGTAGTTTCCTCGTTACGGTGATTAAGA AAGTGACAGCTTCGGGGAACAATGGTCAAGGATGGTTGGCTGATGACATTAACCATGGAAGGCTTGATTGCTTCTATGGGGTGCTGGCTGTTCTTGGTGT TCTGAACTTTGGTGTGTTCTTGGTGTGCGCATTTTGGTACAAGCCTAATAATGATCATGCCAAAGTAAGTGGTGGGTTGCAGATGGAAAGTAGCAATGCT GAAAAGAAGCAGAAGAAGAAGAAGAATGATAGTGGGGTTGATCAGGACAATAATTGTTGA
AA sequence Show only first row Show all	>Lus10030081 pacid=23172592 polypeptide=Lus10030081 locus=Lus10030081.g ID=Lus10030081.BGIv1.0 annot-version=v1.0 MCQDEKRSLTVPDAVDYKGFPADKSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYLIGTMHMPSAASANFVTDFMGTSFLLCLLGGFLADTFLGRFKT IAIFSAVQALGTATLAVATKLPQLRPPPCHANNHSCTQATGFQMGFLYMALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKSQMAFFFNRFFFFISLGTL MAVTVLVYIQDEVGRSWAYGICSASMFIAIVILLSGSRKYRYKKSMGSPIVHIFQVIAASIRKRKLDHPYDDLSLLYENTPEASRIQHTSQFQLLDKAAI VVEADFENGNGSEPNPWKLCTVTRVEEVKMMAKLLPIWATTIIFWTAYAQMITFSVEQASTMDRFVGSFQIPAGSLTVFFVAAILLSLAVYDRLVMPIWK KWTGKPGWFTILSLLTDYYNDPGFTNLQRIGMGLALSTMGMAVAAVVETRRLSAAAKSTAATSSNPHHLQLSVFLLIPQFLLVGSGEAFIYTGQLDFFIT QSPKGMKTMSTGLFLTTLSLGFFISSFLVTVIKKVTASGNNGQGWLADDINHGRLDCFYGVLAVLGVLNFGVFLVCAFWYKPNNDHAKVSGGLQMESSNA EKKQKKKKNDSGVDQDNNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26690			Major facilitator superfamily ...		Lus10030081 [exp]	0	1
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	10.0	0.8161
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	17.3	0.8089
AT2G34930			disease resistance family prot...		Lus10006947 [exp]	21.0	0.7649
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	23.6	0.7989
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	27.5	0.7961
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10029110 [exp]	35.2	0.7823
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Lus10017430 [exp]	45.0	0.7560
AT2G17080			Arabidopsis protein of unknown...		Lus10023959 [exp]	46.9	0.7694
					Lus10017937 [exp]	47.2	0.7574
AT1G77660			Histone H3 K4-specific methylt...		Lus10028062 [exp]	49.3	0.7495

Compare expression of checked genes

Lus10030081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.