Plant FIBer expression Database

Lus10030082 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032968
[exp]
133 / 4e-39 ND /
Lus10008265
[exp]
115 / 8e-33 ND /
Lus10042987
[exp]
112 / 1e-31 ND /
Lus10001867
[exp]
94 / 7e-24 ND /
Lus10022513
[exp]
91 / 4e-22 ND /
Lus10019572
[exp]
86 / 3e-21 ND /
Lus10005826
[exp]
78 / 1e-18 ND /
Lus10009700
[exp]
76 / 2e-17 ND /
Lus10006289
[exp]
67 / 3e-14 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10030082 pacid=23172567 polypeptide=Lus10030082 locus=Lus10030082.g ID=Lus10030082.BGIv1.0 annot-version=v1.0
ATGCATCCGGCGCGTGGAAGGAAGACGAATGAGGCTCGGCGGCACTGGTTGAACTTGGATGGACGACGGACTGAAGGAAAGAAGATGTGGTGGCGCGGAA
ATTGGAGCTCCAATGTTCTTGGAGTCGCCCGAGGCTGGACGGCGGTGATTGGTCTCATCGGACAAGAGTTTGAAGAAGAAGGAGGTGGAGAAGGCAGAGC
TGATCAATCCCATATCATTAGTAGAGGCTTAGAGAGGTTAGAGGAGGCTTCAGAAGAACCTGGGAAACTTCAGGAGTCAATGCCGTCTAGGAGGAATACA
CGAGCCGCCCTGACACCTCGACCGAGTGGCTTTGGGAGTCGTAGAGAGAGTGATCACGAGAAGTCGGTTGAGATGGTGAGGGATCCGCCTGCACCTAGGT
TGGATTTCAAGGAGCTAACTCGAGTGGGCGCCATCGCCTTTGATGGGGAAACCAATGACCCTCAGTTGTCAGTAGATAGGCTGAGAGACATGACCAATGC
ATTCAGATACCTACAGCCTGCACCCGAGCAAAGAGTGTTGTATGCTGCCTACCTATTGAGGGGCACATCAAAGGAGTGGTGGAGTAGTCAGGTGGAGGTT
GAGGATGACCTTTTTGGAAAGGACTATGAGGAATTCTTGATTCTTTTCAAGAAAGAATTCATGTAG
AA sequence
>Lus10030082 pacid=23172567 polypeptide=Lus10030082 locus=Lus10030082.g ID=Lus10030082.BGIv1.0 annot-version=v1.0
MHPARGRKTNEARRHWLNLDGRRTEGKKMWWRGNWSSNVLGVARGWTAVIGLIGQEFEEEGGGEGRADQSHIISRGLERLEEASEEPGKLQESMPSRRNT
RAALTPRPSGFGSRRESDHEKSVEMVRDPPAPRLDFKELTRVGAIAFDGETNDPQLSVDRLRDMTNAFRYLQPAPEQRVLYAAYLLRGTSKEWWSSQVEV
EDDLFGKDYEEFLILFKKEFM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10030082
[exp]
0 1
AT5G27000 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABID... Lus10029865
[exp]
5.6 0.8530
AT1G09170 P-loop nucleoside triphosphate... Lus10020682
[exp]
10.0 0.8393
AT5G63180 Pectin lyase-like superfamily ... Lus10006241
[exp]
11.5 0.8122
AT2G29940 ABCG31, PDR3, A... ATP-binding cassette G31, plei... Lus10040676
[exp]
12.7 0.8175
AT3G18440 ATALMT9 aluminum-activated malate tran... Lus10024710
[exp]
14.7 0.7902
Lus10020856
[exp]
17.6 0.6656
AT3G27440 UKL5 uridine kinase-like 5 (.1) Lus10022289
[exp]
18.3 0.8099
AT5G66310 ATP binding microtubule motor ... Lus10014268
[exp]
19.9 0.8060
AT5G16780 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVEL... Lus10014613
[exp]
25.3 0.7551
AT4G26140 BGAL12 beta-galactosidase 12 (.1.2) Lus10008974
[exp]
27.6 0.7933

Lus10030082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.