Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037707 [exp] 87 / 2e-20 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1) Lus10038569 [exp] 62 / 2e-12 ND / Lus10010596 [exp] 56 / 4e-10 ND / Lus10000169 [exp] 39 / 0.0006 ND / Lus10038619 [exp] 39 / 0.0006 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030083 pacid=23172562 polypeptide=Lus10030083 locus=Lus10030083.g ID=Lus10030083.BGIv1.0 annot-version=v1.0 ATGAAGTACACTCCAAAGTCACCCTACCCAACCCCCATCAAGAAGAGATTCCTGGAGCTCATCAAAAAGCAAGAAGTCACTCGCTCTTTCTTAAAGGCCT TCACAAAAATTCCAGCTTATGCAAAATTTCGGAAGGATGTACTAAACAAGAAGATAAACTTTAATGATACCACAAAATTCACCCTCGTTGAAGAAGGATC AGCTATAAACATCACAATTAATGCAACTCAGGTTAAGGAAGTCAGGAAGGAGTGGAAGCGCAAATCCCAAGCATATTTTGATTTGGAAGCTAGTTTCTCT GGAGGCAATGGAATTAAATCTCCCTTGCGAGAGGAGATTCCACCTCCATCTAGTAGTCCTCCAAAGGCTGGAGGGGGAGAAGAGGTTCTCACTAAGACTC CTTCTGGAGTGGAGGTGATGTCCTCTTCTCAACAAGTTGAAGCCCTCGAACTTTCTACGCAAGGGGAGAGCTTTTTGTTGGGCATGTTAATGTTCACTCT GAAGTGGTGA
AA sequence Show only first row Show all	>Lus10030083 pacid=23172562 polypeptide=Lus10030083 locus=Lus10030083.g ID=Lus10030083.BGIv1.0 annot-version=v1.0 MKYTPKSPYPTPIKKRFLELIKKQEVTRSFLKAFTKIPAYAKFRKDVLNKKINFNDTTKFTLVEEGSAINITINATQVKEVRKEWKRKSQAYFDLEASFS GGNGIKSPLREEIPPPSSSPPKAGGGEEVLTKTPSGVEVMSSSQQVEALELSTQGESFLLGMLMFTLKW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030083 [exp]	0	1
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	2.0	0.8644
AT1G73390			Endosomal targeting BRO1-like ...		Lus10026368 [exp]	2.4	0.8532
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	4.0	0.8546
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10017796 [exp]	4.9	0.8377
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10013539 [exp]	5.5	0.8296
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	7.4	0.8469
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	9.2	0.8439
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10037485 [exp]	10.2	0.8500
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	10.8	0.8322
AT2G38430			unknown protein		Lus10003276 [exp]	11.7	0.8147

Compare expression of checked genes

Lus10030083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.