Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15050 480 / 3e-168 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 472 / 4e-165 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 448 / 4e-156 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 440 / 8e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 424 / 1e-147 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 422 / 2e-145 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 402 / 9e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 398 / 7e-137 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 372 / 9e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 333 / 2e-111 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001076 [exp] 744 / 0 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 488 / 2e-171 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 478 / 1e-167 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 431 / 2e-149 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 427 / 1e-147 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 417 / 1e-143 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 408 / 7e-140 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 382 / 3e-130 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020316 [exp] 379 / 8e-129 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G003300 [exp] 577 / 0 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 489 / 6e-172 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 467 / 2e-163 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 437 / 3e-151 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 426 / 2e-147 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 425 / 6e-147 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 419 / 2e-144 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 394 / 1e-134 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 388 / 7e-133 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 335 / 4e-112 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10030084 pacid=23172621 polypeptide=Lus10030084 locus=Lus10030084.g ID=Lus10030084.BGIv1.0 annot-version=v1.0 ATGGAAACTATCAACAGTATCACCAGCAAATTGCAGCAGCAGCACAAGAAGCAGCAGAAATGGTTCTTCCTACTCATTTCCTCCCTCTTCCTCTCCACTC TTTTAATCCTCCTCACACTCACTTTCTCCCCCACCACTTCCACCTCCACCCAGCTCCTCTTCCACTCCTACCGCCACACCTGGTGGCAAAAATCCGGCGC CGGCGCCGACAGGAAACTCCCGCGTTTTGCGGAATCCAAGCTCTCAAAGCCCGAGGCTTCAGCTACCAAAGTGCCTCGTCTTGCTTATCTGATATCTGGG TCTGCTGGGGATGGGGTTAATCTCAAGAGGGCACTCAAAGCTCTCTACCATCCTAGGAACCAGTACGTCGTCCATTTGGACTTGGAGGCTCCTTTGGAGG AGAGATTGGAGCTGATCAGGTGGGTCAAGGAAGGGGAGAAGGTTTTCCAGCAAGTTGGTAATGTGAGGGTTGTTGTTAGGTCGAATTTGGTGACCTATAG AGGACCTACTATGGTCAGCAACACGCTCCATGCTGCTTCTATTTTGTTGAGGGATGGCGGCGAATGGGATTGGTTCATCAATTTGAGTGCCTCTGATTAC CCTTTGCTTACTCAAGATGATTTACTTTACACATTGTCTTCCATCCCAAGGGACCTCAACTTTATTGAGCATACCAGTGACATTGGTTGGAAGGAAGATC AGCGAGCTAGGCCGGTTATAATCGATCCTGGGCTATACAGCCTGCAAAAATCAGATGTTTTCTGGGTTACAGAACGAAGGAGTGTCCCTTCTGCATATAG ACTCTTTACAGGTTCAGCATGGATGATGCTTTCTCGTCCTTTCATCGAATATTGTCTCTGGGGATGGGACAATCTCCCAAGGATAGTACTAATGTACTAC ACAAACTTCCTCTCTTCACCTGAAGGCTACTTCCACACAGTGATATGCAATGCTGACGAGTTCCGGAACACTACTGTTAACCACGACCTCCATTTCATTT CCTGGGATAACCCTCCTAAGCAACACCCTCATTTTCTCACTCTGGATGACTATCAGAGTATGGTTGACAGCAATGCACCCTTTGCTAGGAAGTTTGGTAG GAACGATCCTGTTCTCGACAAGGTTGATTCTGAGATACTTGGCCGAAGTGCTGATGGATTTGTTCCAGGTGGGTGGTGGTCGATAAATGAAGGAAATCCC AATTCAAGCCTCCCAGAAAACATCAGGGTAAACACGACGGAACTTAAACCTGGTCCGGGAGCTCAAAGGCTTAAGAATCTTATCAAAGGTCTTCTGTCAG CTGATGGTTTTCACACATCGCACTGCATCTGA
AA sequence Show only first row Show all	>Lus10030084 pacid=23172621 polypeptide=Lus10030084 locus=Lus10030084.g ID=Lus10030084.BGIv1.0 annot-version=v1.0 METINSITSKLQQQHKKQQKWFFLLISSLFLSTLLILLTLTFSPTTSTSTQLLFHSYRHTWWQKSGAGADRKLPRFAESKLSKPEASATKVPRLAYLISG SAGDGVNLKRALKALYHPRNQYVVHLDLEAPLEERLELIRWVKEGEKVFQQVGNVRVVVRSNLVTYRGPTMVSNTLHAASILLRDGGEWDWFINLSASDY PLLTQDDLLYTLSSIPRDLNFIEHTSDIGWKEDQRARPVIIDPGLYSLQKSDVFWVTERRSVPSAYRLFTGSAWMMLSRPFIEYCLWGWDNLPRIVLMYY TNFLSSPEGYFHTVICNADEFRNTTVNHDLHFISWDNPPKQHPHFLTLDDYQSMVDSNAPFARKFGRNDPVLDKVDSEILGRSADGFVPGGWWSINEGNP NSSLPENIRVNTTELKPGPGAQRLKNLIKGLLSADGFHTSHCI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10030084 [exp]	0	1
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	10.4	0.7417
AT5G54920			unknown protein		Lus10016477 [exp]	11.4	0.7898
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	16.9	0.7276
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10034610 [exp]	22.3	0.7418
AT5G62960			unknown protein		Lus10014556 [exp]	30.0	0.7207
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040886 [exp]	38.8	0.7247
AT2G21630			Sec23/Sec24 protein transport ...		Lus10019516 [exp]	41.0	0.6973
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10003065 [exp]	41.7	0.6538
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	43.0	0.7004
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10022029 [exp]	45.7	0.7114

Compare expression of checked genes

Lus10030084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.