Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17000 199 / 9e-63 Zinc-binding dehydrogenase family protein (.1) AT5G16990 199 / 1e-62 Zinc-binding dehydrogenase family protein (.1) AT5G16970 196 / 2e-61 AT-AER alkenal reductase (.1) AT5G38000 189 / 1e-58 Zinc-binding dehydrogenase family protein (.1) AT5G37940 187 / 9e-58 Zinc-binding dehydrogenase family protein (.1) AT3G03080 184 / 9e-57 Zinc-binding dehydrogenase family protein (.1) AT5G16960 184 / 1e-56 Zinc-binding dehydrogenase family protein (.1) AT5G37980 182 / 9e-56 Zinc-binding dehydrogenase family protein (.1) AT1G26320 180 / 4e-55 Zinc-binding dehydrogenase family protein (.1.2) AT3G59845 178 / 2e-54 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030087 [exp] 351 / 5e-122 AT5G16990 336 / 1e-114 Zinc-binding dehydrogenase family protein (.1) Lus10001077 [exp] 189 / 1e-60 AT5G16990 182 / 1e-56 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 190 / 6e-59 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 179 / 7e-55 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10003638 [exp] 176 / 2e-54 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 178 / 3e-54 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 177 / 8e-54 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 176 / 2e-53 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 171 / 2e-51 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G070000 [exp] 243 / 1e-79 AT5G16990 341 / 1e-116 Zinc-binding dehydrogenase family protein (.1) Potri.010G177700 [exp] 196 / 3e-61 AT1G65560 514 / 0.0 Zinc-binding dehydrogenase family protein (.1) Potri.017G002950 [exp] 187 / 4e-58 AT5G16970 464 / 7e-165 alkenal reductase (.1) Potri.007G142400 [exp] 179 / 1e-54 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G002500 [exp] 178 / 3e-54 AT3G03080 433 / 1e-152 Zinc-binding dehydrogenase family protein (.1) Potri.007G143800 [exp] 175 / 3e-53 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143600 [exp] 173 / 2e-52 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G002300 [exp] 172 / 3e-52 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 168 / 2e-50 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.017G004800 [exp] 164 / 2e-49 AT5G16970 409 / 8e-144 alkenal reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10030086 pacid=23172557 polypeptide=Lus10030086 locus=Lus10030086.g ID=Lus10030086.BGIv1.0 annot-version=v1.0 ATGAAGACTCATGTAGATGGTTTCCCGAAAGAGGCAGACTTTGAGTTAGAGTCCCAACCTGTGTCCTTGTCGTTGGAGGCTGGTGAGTTGTTGGTGAAGA TCCTTTATGTGTCTATCGATCTTTCCCAGCTCAACCGTATGAAGACCCAAAGCTCTTCTCATGGTAAAATCGACCACATCTCACAAGGCTTTGTCCCTGG ACAGGCGATTGATAGCTATGGAATTGGGAAAGTAGTTGCTTCAGGGAACCCAGAATTCGACAAGGGTGAGTTGGTAGCTGGACTTTTGACGTGGGCAGAC TACTGTGTGCTGAAACCGGGTAGCTTTTTCAGGAAACTGGACGCCATGGGGTTTCCTCTCTCAACCCATGTTGGAGCTTTAGCATTCAGTGGTCTGCATA TGTTGGACTATTTGAGGTGGGGAAGGCAAAGAAAGGAGACACTGTTTGGACAGTTTGCAAAGCTTCATGGCTGCTACGTTGTTGGCTGTGCCGGGACCAA CCCCAAAGATGATTTGCTGAAAGAAAAGCTTGGATTTGATGATGCATTCAACTACAAGGAAGAAACTGACCTCAAGGCTACTCTCAAGAAGTATTTCCCA ACTGGGATCGATGTGTATTTCGACAATGTAGGAGGCGAGATGCTGGGGGCCGCAGTTGAGAGCATGAACACGTTTGGAAGAGTAGTAGCTTGTGGCGCCA TCTCCGAGTACACGGGTACTTGA
AA sequence Show only first row Show all	>Lus10030086 pacid=23172557 polypeptide=Lus10030086 locus=Lus10030086.g ID=Lus10030086.BGIv1.0 annot-version=v1.0 MKTHVDGFPKEADFELESQPVSLSLEAGELLVKILYVSIDLSQLNRMKTQSSSHGKIDHISQGFVPGQAIDSYGIGKVVASGNPEFDKGELVAGLLTWAD YCVLKPGSFFRKLDAMGFPLSTHVGALAFSGLHMLDYLRWGRQRKETLFGQFAKLHGCYVVGCAGTNPKDDLLKEKLGFDDAFNYKEETDLKATLKKYFP TGIDVYFDNVGGEMLGAAVESMNTFGRVVACGAISEYTGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030086 [exp]	0	1
					Lus10037007 [exp]	5.1	0.7441
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10018993 [exp]	8.1	0.7336
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030085 [exp]	8.8	0.7646
					Lus10043115 [exp]	12.0	0.6885
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10035930 [exp]	13.0	0.7227
AT4G36210			Protein of unknown function (D...		Lus10010626 [exp]	13.6	0.7054
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039533 [exp]	13.8	0.7140
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013583 [exp]	19.4	0.7012
AT1G18010			Major facilitator superfamily ...		Lus10019528 [exp]	22.3	0.7084
					Lus10015577 [exp]	30.0	0.6464

Compare expression of checked genes

Lus10030086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.