Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16990 316 / 1e-106 Zinc-binding dehydrogenase family protein (.1) AT5G16970 315 / 2e-106 AT-AER alkenal reductase (.1) AT5G17000 308 / 1e-103 Zinc-binding dehydrogenase family protein (.1) AT5G38000 301 / 7e-101 Zinc-binding dehydrogenase family protein (.1) AT5G37940 297 / 2e-99 Zinc-binding dehydrogenase family protein (.1) AT3G03080 296 / 1e-98 Zinc-binding dehydrogenase family protein (.1) AT5G37980 294 / 6e-98 Zinc-binding dehydrogenase family protein (.1) AT1G65560 292 / 3e-97 Zinc-binding dehydrogenase family protein (.1) AT5G16960 287 / 2e-95 Zinc-binding dehydrogenase family protein (.1) AT3G59845 286 / 3e-95 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030086 [exp] 348 / 7e-121 AT5G16990 199 / 9e-63 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 296 / 6e-99 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 290 / 1e-96 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 287 / 3e-95 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 286 / 4e-95 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 286 / 9e-95 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 284 / 3e-94 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 284 / 6e-94 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 283 / 3e-92 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G070000 [exp] 384 / 2e-133 AT5G16990 341 / 1e-116 Zinc-binding dehydrogenase family protein (.1) Potri.010G177700 [exp] 314 / 5e-106 AT1G65560 514 / 0.0 Zinc-binding dehydrogenase family protein (.1) Potri.007G142400 [exp] 306 / 5e-103 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 293 / 9e-98 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143600 [exp] 291 / 7e-97 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.007G143800 [exp] 291 / 1e-96 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 288 / 8e-96 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.017G002950 [exp] 285 / 1e-94 AT5G16970 464 / 7e-165 alkenal reductase (.1) Potri.017G002700 [exp] 284 / 5e-94 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002500 [exp] 284 / 6e-94 AT3G03080 433 / 1e-152 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10030087 pacid=23172622 polypeptide=Lus10030087 locus=Lus10030087.g ID=Lus10030087.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTGAGCAACAGGGTAGTTGTGGTGAAGACTCACGTCGATGACTTCCCAAAAGAGACAGACTTTGAAGTCATATCCCAAGTTTTGTCTCTGT CAGCTAAGGCTGGTGAGTTGGTGGTGAAGAACCTCTACGTCTCCATCGATCCTTACCAGCTCAACCGTATGAAGAGCCAGAGCTCCTCTCAGGGTAAAAT CACCTTCTCAGAAGGCGTTCTTCTCGGGGAGGCGATTGATACTTATGGAATTGGGGAAGTAGTTGCTTCAGGGGACCCTGAATATGAGAAGGGTGACTTT GTAGCTGGACTTTTGACTTGGGCAGACTACTGTGTGTTGAAACCAGGTGGCATCTATAGGAAACTTGACGCCATGGGATTTCCTCTCTCAAACCACGTCG GAGCTTTAGCATTTAGTGGCCTCACGGCATATGCTGGACTGTTCGAGGTTGGGAAGGTGAAGAAAGGAGAGAAAGTGTTCGTTTCCACAGCTTCTGGTTC AGTTGGTCATTTAGTTGGGCAGTTTGCAAAGCTCCATGGCTGCTATGTTGTTGGCAGTGCTGGCACCAAACCTAAAGTAGACTTGTTGAAAGAAAAGTTA GGTTTTGATGACGCATTCAACTACAAGGAAGAAACTGACCTCAAGGCTACTCTGAAAAAGTATTTTCCAGATGGGATCGATGTGTACTTCGACAATGTAG GAGGCGAGATGTTAGAGGCAGCATTTGAGAACATGAATACGTTCGGCAGAGTAGCTGTTTGCGGTGTGATCTCCGAATATACCGGGAAGGGGAAGAAGGC GGCTCCTGATATGTTGGACGTCATCTACAAGAGGATAACAATACAGGGATTTTTGGCAGGTGATTTCATGAATGTGTTCTCTGAATTCATTTCACTAGCA TCTCAACATATGAGATCAGGAAAGATGGTGTCTATCGAAGACATTTCAATTGGTTTGGACAGCATTCCTTCCGCATTTGTTAGTCTCTTCACAGGCGGTA ATGTTGGAAAGAAGATTGTTCAAATTGCACAAGGATGA
AA sequence Show only first row Show all	>Lus10030087 pacid=23172622 polypeptide=Lus10030087 locus=Lus10030087.g ID=Lus10030087.BGIv1.0 annot-version=v1.0 MEEVSNRVVVVKTHVDDFPKETDFEVISQVLSLSAKAGELVVKNLYVSIDPYQLNRMKSQSSSQGKITFSEGVLLGEAIDTYGIGEVVASGDPEYEKGDF VAGLLTWADYCVLKPGGIYRKLDAMGFPLSNHVGALAFSGLTAYAGLFEVGKVKKGEKVFVSTASGSVGHLVGQFAKLHGCYVVGSAGTKPKVDLLKEKL GFDDAFNYKEETDLKATLKKYFPDGIDVYFDNVGGEMLEAAFENMNTFGRVAVCGVISEYTGKGKKAAPDMLDVIYKRITIQGFLAGDFMNVFSEFISLA SQHMRSGKMVSIEDISIGLDSIPSAFVSLFTGGNVGKKIVQIAQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030087 [exp]	0	1
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10034214 [exp]	1.4	0.8972
AT1G11860			Glycine cleavage T-protein fam...		Lus10001624 [exp]	3.5	0.8964
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	4.6	0.9039
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023778 [exp]	5.7	0.8682
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	6.3	0.8928
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	9.4	0.8948
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10009261 [exp]	9.9	0.8854
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	10.1	0.8902
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	11.6	0.8588
AT3G01060			unknown protein		Lus10005219 [exp]	12.6	0.8828

Compare expression of checked genes

Lus10030087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.