Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51200 2274 / 0 EMB3142 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005726 [exp] 3296 / 0 AT5G51200 2356 / 0.0 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119600 [exp] 2711 / 0 AT5G51200 2460 / 0.0 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0585 [flax] [poplar] Nucleoporin_A PF11894 [flax] [poplar] Nup192 Nuclear pore complex scaffold, nucleoporins 186/192/205
Representative CDS sequence Show only first row Show all	>Lus10030088 pacid=23172581 polypeptide=Lus10030088 locus=Lus10030088.g ID=Lus10030088.BGIv1.0 annot-version=v1.0 ATGGTTCCCCCGAGGCAACTTCTCTCCACGATTGAATCTTCTCTGCTCGCGCCTACGCCGCCGTCACCGACGCAGAGAATCGAGCTTCTCCATGCCATCC GCACCTCTCTGCCTTCCTTTAAATCACTCTTCAGTTATCCGCCACCTAAACAGTCGGACCGTGCCCAAGTGCAGTCCAAGGAAGTTAGATTGCCGGATTC ACCGCCAATCTCGCTAGATGACCAGGGCGTGCCAATTTGGGGTTTGATGGGACGACAACCATTAGAAATATTTCGACTTACAGCTGGACTTTGGTATACT GAGAGACGAGATCTATTAACAGCTCTCTACACGCTCTTGAGGGCTGTTGTTCTTGATCAGGGCCTAGGCCTACCAGCTGAACTCCTGTCAGAGATCCAAA AGTATTTGGAAGATCTTATCAATGGTGGTCTTAGACAGCGACTGATTTCTCTCATAAAGGAACTTAATCGTGAAGAACCAGCTGGATTAGGTGGACCTCA AAGTGAACCATATGTTCTTGATTCTAGAGGCTCCCTTGTTGAGCGTCGGTCGGTGGTTTGTAGGGAGAGACTGGTTGTTGGACATTGCCTTGTCCTTTCA GTTCTTATTATAAGGGCAGGTTCAAAAGACGTCAAGGATATGTTTCAGGTTTATAAAGACAGTGCTGCTGATCTTACGGATGACATTAGCACTTTGAAAC GTCAGATAGCAGTCAGTGTGTTCTTCGCTCTTGTGATTGCATTTGTCTCAGATGCCCTATGTGCAGTTCCTGAAAAAGCATCAGTACTTTCCCGTGACTC TACCTTTAGGAAAGAATTTCAAGAAATAGTGATGTCCTCTGGAAATGATCTAAAGATGGAAGGCTTTATAGGGGGTGTACGGCTTGCGTGGTCTGTACAT TTGATGTTAGTGTTTGATGGGAATTCTCCAAGGGAGGCAGCATCAGTTAATGCCTCAAATGATTTAGGATATCTGAATTCTTGCCTAGACTCTGTTTTCT CAAACAATGTTTTCCAGTTCTTAATTGACAACATCCTCGGAACTGCAGCTTACCAGAACGATGATGAGGATATGGTGTATATGTACAACGCATACCTCCA CAAGCTGATCACTTGCTTCTTATCACATCCACTTGCTAGGGACAAGGTAAAATATTCGAAGGACAAAGCCAAGAGTTTGCTTAATTCTTATCGGACGACT GCCCCACACGATCTGACACATGACGGAAGCTATCACTCCCAATCATCTGCCAACTCCGGAAATGTGCCTTTTGTCTCTCTATTGGAATTTGTCAGTGAGA TATATAAGCCGATGACTGCTCTAGATAATGGATTTGCTGTAAATTTGTGGACCAGTTGGCCTCTCGGTTATCTCATAAGTTTCCTGAATTCTTTTCAGAA GGAGCCTGAGCTGTTATCTGGTAATGACACGATATGGACATTTGTGAACTTTGCTGGAGAGGATCATACTAACTTCCAAACACTTGTGGCTTTCTTGAGA ATGCTTAGTACTTTGGCTGCAAGTCATGAAGGTGCTGTAAAAGTTTTTGAGCTACTTCAAAGCAAAGCGTTTCACTCTGTTGGTTGGAGCACTTTGTTTG ATTCCCTGACAATTTATGATGAGAGGTTCAAACAAACCCTTCAGACTACTGGAACCATGTTACCAGAATTTCCCGGGGGAGATGCTAAAGCACTTGTCGC TTATCTGAATGTTCTTCAGAAGGTTATGGAACATGGACCACCTAATGAAAGGAAGGACTGGTTTCCTGAGATTGAACCACTTTTCAAGCTTCTCCGTTAT GAAAATGTGCCACCGTTTTTGAAGGGTGCTCTGCGAGATGCCATTACTACTTTTGTACGTGTCTCTCCTGTTCTGAAAGATGCTATATGGCGTTACTTAG AGCAGTATGATTTACCAGTTGTTCTAGGCGGGAATACTGGAACAGGAGTACCGTCTATTGGAGCACAGGTTTATGACATGCAATATGAACTGAATGAGGT TGAAGCAAGGAGAGAAAGATATCCTTCTACTATATCATTTCTTAACCTGTTAAATACTCTTATTGCTGAGGAAAAAGATGCAACTGATAGAGGGCGGAGA TTCATAGCCATATTCCGGTTCATATATGATCACGTGTTTGGTCCCTTCCCTCTTAGAGCATATGCTGATCCAGTTGAAAAATGGCAATTAGTGATCGCTT GTCTTCAGCATTTTCATATGATGCTGAGCATGTATGACATTCATGATGATGACATTGACAGTATGGTTAGTCAATTGCAGCTTTCAACAGTAACACAAGT ATCTCAGCTTCAGATGCAGCTTCCTGTGTTGGAGTTGCTGAAGGACTTCATGAGTGGCAAGACTGTTTTCCGAAACATAATGAGCATTCTTTTGCCAGGA GTCGACTCGATCATCAGTGAACGGACTAGTCAAATACATGGGCATCTACTTGAAAAAGCTGTTCAGCTTTCTTTGGACATTATAATCCTCGTCTTACAAA AAGATTCGCTTGTTTCTGATTACTGGCGTCCCCTCTATCAGCCTTTGGATGTCGTACTGTCCCAAGATCATAATCAAATTATTGCACTGCTGGAGTATGT CAGATATGATTTTCTTCTACATATTCAGCAATGTTCTATAAAGATCATGAGTATTCTTAGTTCTCGCATGGTGGGCCTTGTACAGTTCCTGTTGAAGTCC AATGCGGCAGCTTCTTTGGTTGAGGATTATGCAGCTTGTCTTGAGCAGCGGTCTGAGGAGTGCCAGGTTATAGAAAATAGTGCTGATGATCCTGGGGTCC TTATAATGCAGCTTCTGATTGATAATATTGGCCGGCCTGCTCCAAATATCACACATCTACTTCTTAAGTTTGATGTTAATAGCTCAGTTGATCGGACAGT TCTTCAACCAAAGTTTCACTACAGTTGTTTGAAGGTTATTCTTGAAATCTTGGAGGAGCTGACGAAACCTGACATAAATTCTGCGCTTCATGAATTCGGT TTCCAGCTTCTTTATGAGCTCTGTTCAGATCCAATAACTTTTGGACCTACAATGGATTTACTCAGCAACAAAAAATATCAGTTCTTTGTTAAGCATGTTG ATACAATTGGTGTTGCTCCACTTCCAAAACGGAATCACAACCAGCCATTACGCATCAGTTCCCTTCACCAGAGAGCTTGGCTGCTGAAGCTTTTAGCCAT CGAGTTGCATTCTGGTTATACAGATTTCCCAAGTCATCGAGAAGCATGCCAGAGCATACTTTCTCATATCTTTGGCGGGAACATAATTGAGATGGGGTCT GATCATATAGTTTCTGATCTTTTACTCCAAAATGGGACTGAACATGGTGGAAACCAGACAATGAACAAGAGTAAGGTGTTGGAGTTGCTTGAGGTCGTTC AGTTCCAATCTCCAGATGCCACAGTGAAGCTTTCACAAATTATATCTAATGCAAAGTATGCCTTACTGGCGGAGGACATACTTGGAAATCCTACAACTTC TGTGAAAGGTGGGATTTATTATTATTCTGAGCGCGGTGATCGTCTTATTGACCTGGCCTCCTTCCGAGACAAGCTTTGGCTGAAATTCAACACTGCATAC CCCCATCTGGGTAACCTTGGTAATGAAGCTGAGTTTGAGGATGTAAGAGAGACAATCCAACACTTGTTGAGATGGGGGTGGAAGTACAATAAGAACCTTG AGGAACAAGCTGCACAACTTCATATGTTAACTGGGTGGTCACACGTTGTTGAGGTGTCTGCATCCAGAAGAATGTCCACCTTTGAAAACCGTTCTGAAAT TTTATATCAGGTTCTTGATGCCTCGTTGAGTGCATCTGCTTCTCCAGACTGTTCGTTGAGGATGGCATTTGTGTTAAGTCAGGTTGCACTTACTTGCATG GCTAAGCTACGGGACGAAAGGTTTCTCTGTCCTGGTGGCATGAATTCTGATAGTATCACATGTCTGGATATCATAATGGTGAAACAATTGCCCAATGGTG CTTGCCACTGCATTTTTTTCAAGCTAATCTTGGCCATTATGAGAACTGAATCATCAGAATCCTTGCGGAGACGCCAGTATGCGTTACTCCTTAGCTATTT TCAGTACTGTCAGCACACTCTTGACCCAGATGTTCCAACAACAGTTCTTCAGTTCTTGTTGCTCGAGGAGCAGGATAACGAAGATTTAGATCTTCAAAAG ATTGATAGAGAGCAGGCTGAACTGGCCCGTGTTAATTTCACAATAATAAGGAAAGAAGGTCAGGCCATCTTGGATCTGATAATAAAGGATGCCACCCAAG GAAGTGAACCTGGGAAAACTATCGCTCTTTATGTTCTAGATGCGTTGATTTGTATTGATCACGAGAGATATTTTTTAAGTCAACTTCAGAGCAGGGGATT CTTAAGATCTTGCTTTGTGAACATCAGCAACACTTGCCATCAGACATCTCTCCACTCTAATGTGAGCTCACTAACTGTGAAGCTGGACGGTGGGCATTCA CTAGATTCATTGCAGCGAGCATGCACTCTTGAGGCTGAACTCGAATTGCTGCTGAGGATTAGCCAGAAGTATGGGAAGTCTGGGTCTCAAGTGTTATTTT CTATGGGTGCTTTGGAGCACATTGCTTCATGCAGGACAGTTACTCTCCAGGGTAGCTTGAGGAGGTTTGACCCTAAGATCAGACGAAATGTCGCTGTAGA TGTTGAAAGACAGAGAATGATTTTGACTCCTATTTTGAGATTGGTGTTTTCACTAACATCATTGATCGATACAGCAGACATTTTTGAGGTGAAGAACAAA ATTGTCCGTGAGGTTATAGATTTTGTGAAAGGACACCAATTGCTCTTTGATCAAATTCTACATGTCGACGTTCATGAAGCTGATGAGTTGACAATAGAGC AGGTCAATCTTGCTGTTGGTATACTTAGCAAGGTCTGGCCTTATGAAGAGAGTGACGAGTTTGGCTTTGTTCAAAGTCTTTTCAGTATGATGTCCCTCCT CTTTTCCCGTGACTTGGAGACCAATACCACCGGCAGATCACTGCAATTATCCGAGGATAGGAGGAAGTTTGAATTGAATTCCTTGCACGTCCGCTTCTGT TTGAGTTCTTATTTATATTTCCTTGTCATGAAGAAGTCAGTGAGACTTCAGGTGTCAGACAACATTGATTACCAAGCTTCTGCTGGTGTGCATCAGCCCA CATTACGATTGCTTGGTTCACTCCTAAGTTTCATGGCAACCTCTCTTGAAAAGGTGGCGGACGAGAAGTCCATGTTGCTTAATAAGATTCGGGATGTAAA CGAGCTGTCCAGGCAGGAGGTAGATGAGATCATAAACATGTGTGCTCGGCAAGATGTCGTCTCACCTTCTGATGGCATACATAAAAGGAGATACATTGCG ATGGTCGAGATGTGCCAACTTTCTGGCAACAGGGGTCAGTCTATAAGATTGTTACTTCCGCTTGCTGAACAAGTGCTAAACATCATTCTAGTTCATTTAC AAGAGAACACGTCGGCATCAGACACTTCTGGAGCTCTCAAAACAATCACATCTGGAGGCAAAGGCAATTATGAAGACGATGATGATGATGTTCATGATTT GTCGTCGTTATGTGGTCATTTGGTGCCAACTCTAGAACGGCTTGAGCTACTGAATGAGGATAAAGTTGGACATAACTTGAAGGTCTTCAGGAGATTGGTG ACATCGCTCAAAGAAACAGCGATACAGAAACTGTAA
AA sequence Show only first row Show all	>Lus10030088 pacid=23172581 polypeptide=Lus10030088 locus=Lus10030088.g ID=Lus10030088.BGIv1.0 annot-version=v1.0 MVPPRQLLSTIESSLLAPTPPSPTQRIELLHAIRTSLPSFKSLFSYPPPKQSDRAQVQSKEVRLPDSPPISLDDQGVPIWGLMGRQPLEIFRLTAGLWYT ERRDLLTALYTLLRAVVLDQGLGLPAELLSEIQKYLEDLINGGLRQRLISLIKELNREEPAGLGGPQSEPYVLDSRGSLVERRSVVCRERLVVGHCLVLS VLIIRAGSKDVKDMFQVYKDSAADLTDDISTLKRQIAVSVFFALVIAFVSDALCAVPEKASVLSRDSTFRKEFQEIVMSSGNDLKMEGFIGGVRLAWSVH LMLVFDGNSPREAASVNASNDLGYLNSCLDSVFSNNVFQFLIDNILGTAAYQNDDEDMVYMYNAYLHKLITCFLSHPLARDKVKYSKDKAKSLLNSYRTT APHDLTHDGSYHSQSSANSGNVPFVSLLEFVSEIYKPMTALDNGFAVNLWTSWPLGYLISFLNSFQKEPELLSGNDTIWTFVNFAGEDHTNFQTLVAFLR MLSTLAASHEGAVKVFELLQSKAFHSVGWSTLFDSLTIYDERFKQTLQTTGTMLPEFPGGDAKALVAYLNVLQKVMEHGPPNERKDWFPEIEPLFKLLRY ENVPPFLKGALRDAITTFVRVSPVLKDAIWRYLEQYDLPVVLGGNTGTGVPSIGAQVYDMQYELNEVEARRERYPSTISFLNLLNTLIAEEKDATDRGRR FIAIFRFIYDHVFGPFPLRAYADPVEKWQLVIACLQHFHMMLSMYDIHDDDIDSMVSQLQLSTVTQVSQLQMQLPVLELLKDFMSGKTVFRNIMSILLPG VDSIISERTSQIHGHLLEKAVQLSLDIIILVLQKDSLVSDYWRPLYQPLDVVLSQDHNQIIALLEYVRYDFLLHIQQCSIKIMSILSSRMVGLVQFLLKS NAAASLVEDYAACLEQRSEECQVIENSADDPGVLIMQLLIDNIGRPAPNITHLLLKFDVNSSVDRTVLQPKFHYSCLKVILEILEELTKPDINSALHEFG FQLLYELCSDPITFGPTMDLLSNKKYQFFVKHVDTIGVAPLPKRNHNQPLRISSLHQRAWLLKLLAIELHSGYTDFPSHREACQSILSHIFGGNIIEMGS DHIVSDLLLQNGTEHGGNQTMNKSKVLELLEVVQFQSPDATVKLSQIISNAKYALLAEDILGNPTTSVKGGIYYYSERGDRLIDLASFRDKLWLKFNTAY PHLGNLGNEAEFEDVRETIQHLLRWGWKYNKNLEEQAAQLHMLTGWSHVVEVSASRRMSTFENRSEILYQVLDASLSASASPDCSLRMAFVLSQVALTCM AKLRDERFLCPGGMNSDSITCLDIIMVKQLPNGACHCIFFKLILAIMRTESSESLRRRQYALLLSYFQYCQHTLDPDVPTTVLQFLLLEEQDNEDLDLQK IDREQAELARVNFTIIRKEGQAILDLIIKDATQGSEPGKTIALYVLDALICIDHERYFLSQLQSRGFLRSCFVNISNTCHQTSLHSNVSSLTVKLDGGHS LDSLQRACTLEAELELLLRISQKYGKSGSQVLFSMGALEHIASCRTVTLQGSLRRFDPKIRRNVAVDVERQRMILTPILRLVFSLTSLIDTADIFEVKNK IVREVIDFVKGHQLLFDQILHVDVHEADELTIEQVNLAVGILSKVWPYEESDEFGFVQSLFSMMSLLFSRDLETNTTGRSLQLSEDRRKFELNSLHVRFC LSSYLYFLVMKKSVRLQVSDNIDYQASAGVHQPTLRLLGSLLSFMATSLEKVADEKSMLLNKIRDVNELSRQEVDEIINMCARQDVVSPSDGIHKRRYIA MVEMCQLSGNRGQSIRLLLPLAEQVLNIILVHLQENTSASDTSGALKTITSGGKGNYEDDDDDVHDLSSLCGHLVPTLERLELLNEDKVGHNLKVFRRLV TSLKETAIQKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	0	1
AT4G38760			Protein of unknown function (D...		Lus10007578 [exp]	1.0	0.9682
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10023991 [exp]	3.0	0.9629
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	3.5	0.9639
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10008428 [exp]	4.0	0.9453
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10006990 [exp]	4.9	0.9567
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	6.0	0.9533
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	6.2	0.9479
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	6.2	0.9425
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	6.7	0.9560
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	7.3	0.9334

Compare expression of checked genes

Lus10030088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.