Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26680 353 / 9e-122 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005721 [exp] 427 / 5e-151 AT2G26680 444 / 6e-158 unknown protein Lus10019418 [exp] 409 / 5e-144 AT2G26680 460 / 4e-164 unknown protein Lus10043275 [exp] 409 / 8e-143 AT2G26680 457 / 6e-162 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017900 [exp] 386 / 8e-135 AT2G26680 457 / 2e-163 unknown protein Potri.002G119800 [exp] 384 / 4e-134 AT2G26680 449 / 4e-160 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030089 pacid=23172590 polypeptide=Lus10030089 locus=Lus10030089.g ID=Lus10030089.BGIv1.0 annot-version=v1.0 ATGGCGAATGGCTGGAGAAGAGAAAGCAGCAGACACCCAAAGCTACTTTCACCAAAGCCTCTCCTCCTCCTTCTCCTATCCCTCACCATCCTTCTCCTCT TCCTCTTCCTCTCTTCTCGTTCCCCTTCAAACCCTAATCTCAATTCCTTCTCCCGCTCCTCAAATTCCTATCCAATCCCTCCTTTCAACTGCCTGAATTC GCCGCAAGCTCACCCTGTGATTGCCAATTTAGTGGAAAATGTCAAGTACCCTTTCCTTTACTTGCTGTCTGATTTCGGCTCCCTACCCGATAAGCCTCAC AAGAACATTGTCAGGCTGCTGAAATGGAAGCTGTTCCGTAAGCCTGATATCTCTGTCACGGTACAGAAGCTTCTCCAAGGGAAGAAGAGAGATGGCGGGG TGGTTGTCGACGTGGGTGCTAATGTGGGAATGGCCAGCTTTGCAGCTGCTGTTATGGGGTTTAAAGTTTTGGCCTTTGAGCCTGTAATGGACAATTCGCA GAGGATTTGTGATGGGATTTGGTTTAATCGAGTTGGGAGTTGGTTACTGTTTTTGAGGCTGGTGCTTCTGATCATGTTGGGAATATCACTTTCTATAAGA TTATTTATTTGTGCGGAAGATAACCAACATGCACATCACACTCAGCATTTTCAACAGTTGGTTGGGCGGCTTGACAATAGTGCTATATCAGCGACGGGTG CAAAATTGGCATTCAAGTCCAACGAGGAAGTAGCAGTTCAAGTAAGGACCATCCCTCTGGATGAAGTGATCCCAGATTCACAGCCAGTACTTCTCCTTAA AATTGATGTTCAAGGCTGGGAGTATCATGTCTTGAGAGGTGCCTCAAAGCTGCTTTCTAGAAATAAAGCTGAAGCACCGTTTCTTATTTATGAAGAAGAT GAACGTTTGCTCCAAGCCAGTAACAACAGCTCCAAAGAGATCCGTGATTTCCTCCATGCTGTCGGATACCATCACTGTACTCAGCATGGCGGCGACGCCC ACTGTACCAAGGATTAG
AA sequence Show only first row Show all	>Lus10030089 pacid=23172590 polypeptide=Lus10030089 locus=Lus10030089.g ID=Lus10030089.BGIv1.0 annot-version=v1.0 MANGWRRESSRHPKLLSPKPLLLLLLSLTILLLFLFLSSRSPSNPNLNSFSRSSNSYPIPPFNCLNSPQAHPVIANLVENVKYPFLYLLSDFGSLPDKPH KNIVRLLKWKLFRKPDISVTVQKLLQGKKRDGGVVVDVGANVGMASFAAAVMGFKVLAFEPVMDNSQRICDGIWFNRVGSWLLFLRLVLLIMLGISLSIR LFICAEDNQHAHHTQHFQQLVGRLDNSAISATGAKLAFKSNEEVAVQVRTIPLDEVIPDSQPVLLLKIDVQGWEYHVLRGASKLLSRNKAEAPFLIYEED ERLLQASNNSSKEIRDFLHAVGYHHCTQHGGDAHCTKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26680			unknown protein		Lus10030089 [exp]	0	1
AT5G66005			Expressed protein (.1.2.3)		Lus10035990 [exp]	5.8	0.7529
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10009231 [exp]	6.7	0.7255
AT1G53120			RNA-binding S4 domain-containi...		Lus10041931 [exp]	7.1	0.7641
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	9.6	0.7523
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10030750 [exp]	13.6	0.7257
					Lus10035529 [exp]	19.4	0.7492
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	27.5	0.7210
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10016734 [exp]	28.7	0.6654
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Lus10041501 [exp]	28.8	0.7162
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	30.2	0.7357

Compare expression of checked genes

Lus10030089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.