Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26670 389 / 2e-137 GUN2, ATHO1, TED4, HY6, HY1 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) AT1G69720 360 / 8e-126 HO3 heme oxygenase 3 (.1.2) AT1G58300 302 / 4e-103 HO4 heme oxygenase 4 (.1) AT2G26550 223 / 5e-72 HO2 heme oxygenase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005718 [exp] 489 / 3e-177 AT2G26670 354 / 7e-124 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) Lus10021748 [exp] 189 / 8e-58 AT2G26550 288 / 2e-96 heme oxygenase 2 (.1.2.3) Lus10042666 [exp] 173 / 5e-52 AT2G26550 263 / 1e-86 heme oxygenase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G131700 [exp] 409 / 4e-145 AT2G26670 364 / 2e-127 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) Potri.006G069700 [exp] 403 / 5e-143 AT2G26670 363 / 3e-127 REVERSAL OF THE DET PHENOTYPE 4, HEME OXYGENASE 6, GENOMES UNCOUPLED 2, ARABIDOPSIS THALIANA HEME OXYGENASE 1, Plant haem oxygenase (decyclizing) family protein (.1), Plant haem oxygenase (decyclizing) family protein (.2) Potri.014G034200 [exp] 238 / 3e-77 AT2G26550 305 / 3e-103 heme oxygenase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0230 [flax] [poplar] HO PF01126 [flax] [poplar] Heme_oxygenase Heme oxygenase
Representative CDS sequence Show only first row Show all	>Lus10030092 pacid=23172631 polypeptide=Lus10030092 locus=Lus10030092.g ID=Lus10030092.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTCGCTCCAATCTCTCAATCCCACTCTCTATTCACCAAACCCCGAACTGGGTTGATTCTATCTTCCCGCTCCTCTGTTCCCCATATCCAAT CCGGGTCGATCAAGTACTTCCGCGTCGTCCCTGCTGTTGTTGCTTCCAAGATGTTCGATAAAATGCCGCTGAGAGCGTCTGCGTCAGATGTCGCGGAGAA GCAGAAGAAGAGGTACCCTGGTGAGGCAAAGGGGTTTGTGGAGGAGATGAGGTTCGTGGCGATGAAGCTGCATACGAGGGAGCAGGCAAAAGAAGGGGAG AAGGAGGTTAAGAAGCCGGAAGAGCAGGCCATTCCCAAATGGGAGCCCTCTGTTGATGGATACTTGAGGTTTTTGGTTGATAGTAAGCTGGTTTATGATA CTCTTGAAGAGATTGTTAACTCTGCTCCTCATCCTATCTATGCTGAGTTTAAGAGCACTGGCCTGGAGAGGTCTGAAAGTCTAGCAAAGGATCTGGAATG GTTCAAAGAGCAGGGCTATACCATTCCCGAACCTTCCTCTCCTGGAGCGACGTACTCGGAATATCTCAAGGAACTGGCAGAGAAGGATCCTCAGGCGTTT ATATGCCACTTCTACAATATTTACTTTGCTCATACAGCTGGTGGTCGGATGATTGGTAGGAAGGTGGCTGAAAAGATACTCAACAGTAAAGAATTGGAGT TCTACAAATGGGATGGTGATCTATCGCAAATCCTACAGAATGTCAGGGACAAGTTGAATAAAGTCGCAGAGAACTGGACTAGAGAGGAGAAGAACCATTG CTTGGAAGAAACTGAGAAGTCATTCAAGCATTCAGGAGAGATCCTCCGTCTTGTACTGTCATAA
AA sequence Show only first row Show all	>Lus10030092 pacid=23172631 polypeptide=Lus10030092 locus=Lus10030092.g ID=Lus10030092.BGIv1.0 annot-version=v1.0 MASFAPISQSHSLFTKPRTGLILSSRSSVPHIQSGSIKYFRVVPAVVASKMFDKMPLRASASDVAEKQKKRYPGEAKGFVEEMRFVAMKLHTREQAKEGE KEVKKPEEQAIPKWEPSVDGYLRFLVDSKLVYDTLEEIVNSAPHPIYAEFKSTGLERSESLAKDLEWFKEQGYTIPEPSSPGATYSEYLKELAEKDPQAF ICHFYNIYFAHTAGGRMIGRKVAEKILNSKELEFYKWDGDLSQILQNVRDKLNKVAENWTREEKNHCLEETEKSFKHSGEILRLVLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	0	1
AT2G27180			unknown protein		Lus10013375 [exp]	1.7	0.9602
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10019755 [exp]	3.0	0.9650
AT5G13760			Plasma-membrane choline transp...		Lus10039585 [exp]	3.9	0.9482
AT4G27745			Yippee family putative zinc-bi...		Lus10007773 [exp]	5.7	0.9544
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	6.9	0.9518
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10043007 [exp]	7.2	0.9596
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10002256 [exp]	7.6	0.9430
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10027026 [exp]	8.9	0.9318
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	9.5	0.9625
AT4G10330			glycine-rich protein (.1)		Lus10001606 [exp]	10.9	0.9570

Compare expression of checked genes

Lus10030092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.