Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04910 382 / 8e-130 O-fucosyltransferase family protein (.1) AT1G22460 116 / 3e-28 O-fucosyltransferase family protein (.1) AT5G64600 115 / 3e-28 O-fucosyltransferase family protein (.1) AT1G35510 112 / 6e-27 O-fucosyltransferase family protein (.1) AT1G14020 111 / 9e-27 O-fucosyltransferase family protein (.1) AT4G24530 110 / 2e-26 O-fucosyltransferase family protein (.1) AT5G35570 110 / 3e-26 O-fucosyltransferase family protein (.1) AT4G38390 109 / 4e-26 RHS17 root hair specific 17 (.1) AT4G16650 108 / 1e-25 O-fucosyltransferase family protein (.1) AT1G20550 107 / 4e-25 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032603 [exp] 407 / 2e-139 AT1G04910 845 / 0.0 O-fucosyltransferase family protein (.1) Lus10017105 [exp] 401 / 2e-135 AT1G04910 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10037830 [exp] 386 / 4e-131 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1) Lus10020882 [exp] 127 / 2e-32 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 118 / 4e-29 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 115 / 6e-28 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 114 / 1e-27 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 112 / 8e-27 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 111 / 8e-27 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057300 [exp] 385 / 8e-131 AT1G04910 828 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G316800 [exp] 373 / 3e-126 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 121 / 5e-30 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 118 / 5e-29 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 117 / 8e-29 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 113 / 2e-27 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 110 / 1e-26 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 110 / 3e-26 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 109 / 3e-26 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 108 / 1e-25 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10030093 pacid=23172569 polypeptide=Lus10030093 locus=Lus10030093.g ID=Lus10030093.BGIv1.0 annot-version=v1.0 ATGGCATCCATGTCGTCGTATGTCCCTCTGACGATTTTGTTGACAGCATGTTCTTGGACTTGGACTACTACAGCAACAACAGTAGAAGCCCAGTTGACAA ATGGGTTCTACTCATCTTCCTGCCCAAATGCTGAAGCCATTGTCAAGTCCACCGTCGAATCAGCCTTTCACAAAGATCCATCAGTTGCCCATGGATTGTT TAGCCTTCATTTCCACGACTGTTTTGCTGGCGCATCGCCCAGTTTCACCATTGATTGTATATTCAGAAAAGGTCTCGGCTCCATTAGATTCTATCCCACT TCCACATCATCTTATCTAACAAATGCCACGACATCTATCTTATTTTCCCTTCCCATCCTTATCATCATTCATCACCATCACCAAAATCAGATATGCTTGC ATTTGCAAGGCTCAGCTCCTTATTACACGCTTCCATCATTATGGTCTATCCACATGTGCTTTGACATATTTAGCCCCAAGGAACAAGCAATATTGAAAAC GTATCGGGAGAAAAATTTTGCCAAGAAAAATTCAGTGTATAATGAGAGGAGGGCTATTGGAAAATGGCCACTGACTCCAGAAGAGGTTGGACTTATCTTA CGAGCTACAGATTTCGTTAACTCGACTCGAATATATCTAGCAGCGGGTGAATTGTTTGGCGGGGAACGATTCATGAATCCTTTCAGGTCTCTGTTTCCTC GTCTTGAAAATCACAGTTCAGTTGATAGCTCAGAAGAGCTATCCACAAACAGCCATGGGTTGTTGGGTTCTCCAGTGGATTACATGGTATGTCTTCTCGC GGACATCTTCATGCCAACATATGACGGACCGAGTAACTTCACAAACAATCTACTCGGGCATCGCCTCTATTATGGGTTCAGAACAACAATCAGACCTGAC AGGAAAGGACTTGCTCCGATTTTCATCGATCGGGAGAACATGAAGAAAGCTGGTTTCGAAGAAGCAGTTAGGCGGGTGATGCTGAAGACTAACTTTGGAG GACCTCATAAGCGGATCTCACCGGAGTCTTTTTATACAAACTCATGGTCGGAGTGTTTCTGTCAAGCAGAGCCACAAAATGCTGTTGATAAATGCCCGCC TGATGATGTTTGGGAAACTCTCTACATAATCAGTTAG
AA sequence Show only first row Show all	>Lus10030093 pacid=23172569 polypeptide=Lus10030093 locus=Lus10030093.g ID=Lus10030093.BGIv1.0 annot-version=v1.0 MASMSSYVPLTILLTACSWTWTTTATTVEAQLTNGFYSSSCPNAEAIVKSTVESAFHKDPSVAHGLFSLHFHDCFAGASPSFTIDCIFRKGLGSIRFYPT STSSYLTNATTSILFSLPILIIIHHHHQNQICLHLQGSAPYYTLPSLWSIHMCFDIFSPKEQAILKTYREKNFAKKNSVYNERRAIGKWPLTPEEVGLIL RATDFVNSTRIYLAAGELFGGERFMNPFRSLFPRLENHSSVDSSEELSTNSHGLLGSPVDYMVCLLADIFMPTYDGPSNFTNNLLGHRLYYGFRTTIRPD RKGLAPIFIDRENMKKAGFEEAVRRVMLKTNFGGPHKRISPESFYTNSWSECFCQAEPQNAVDKCPPDDVWETLYIIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04910			O-fucosyltransferase family pr...		Lus10030093 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028857 [exp]	3.0	0.8524
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037662 [exp]	6.0	0.8710
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10016569 [exp]	7.9	0.8584
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007714 [exp]	10.1	0.8257
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	13.2	0.8924
AT5G45690			Protein of unknown function (D...		Lus10005416 [exp]	18.9	0.8763
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	28.4	0.8684
AT3G50120			Plant protein of unknown funct...		Lus10004515 [exp]	40.8	0.8591
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10036955 [exp]	43.2	0.7554
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	43.5	0.7866

Compare expression of checked genes

Lus10030093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.