Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20150 356 / 8e-125 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT2G26660 347 / 5e-121 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT2G45130 213 / 2e-68 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT5G15330 206 / 4e-65 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT1G63010 52 / 3e-07 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT4G11810 50 / 8e-07 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT3G23430 44 / 8e-05 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT2G03240 42 / 0.0004 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G22990 42 / 0.0004 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT1G26730 41 / 0.0008 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043272 [exp] 380 / 8e-134 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 367 / 3e-126 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002018 [exp] 322 / 5e-111 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002908 [exp] 319 / 8e-110 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10009314 [exp] 56 / 1e-08 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 51 / 5e-07 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 48 / 6e-06 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10021164 [exp] 42 / 0.0006 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 42 / 0.0006 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069500 [exp] 375 / 1e-131 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G131500 [exp] 370 / 1e-129 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 317 / 4e-109 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.006G253400 [exp] 310 / 3e-106 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.002G143900 [exp] 232 / 7e-76 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 229 / 8e-75 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.017G086600 [exp] 177 / 1e-53 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G193200 [exp] 167 / 1e-51 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.001G135950 [exp] 115 / 4e-32 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G078000 [exp] 47 / 6e-06 AT4G22990 978 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10030095 pacid=23172608 polypeptide=Lus10030095 locus=Lus10030095.g ID=Lus10030095.BGIv1.0 annot-version=v1.0 ATGAAGTTCGGGAAAAGCCTTAGCAACCAGATCGACGACACTCTCCCGGAATGGAGGGACAAGTTCCTCTCTTACAAGGAGCTCAAGAAGCGATTGAAGT TCATTCAGCCTAACAGAGCCGCCGGATCATCATCAGATCATAGGCCTGCAAAGCGTCAGCGATTGGAAGAAGCCGCCACATCTGGGAGCATGACCGATGA GGAATTCGATTTCATTATGCTGTTGGAAGCTGAACTCGAGAAATTGAACGCCTTCTTCGTCGAGAAGGAGGAAGAGTACATCATTAGGTTGAAGGAGGTG CAAGATATGGTAGCAAGGGCAAAGGACTCTAGTGAGGAAATCTTCAAAATCCGAAAAGAGATTGTTGATTTTCATGGAGAGATGATTTTACTGGAGAATT ACAGTGCTCTTAACTATACAGGACTAGCAAAAATACTGAAGAAGTACGACAAAAGAACAGGGGCGCTAATCCGGCTGCCCTTCATCCAGAAAGTGCTACA GCAACCTTTCTTCACTACAGACCTTCTGAACAAGCTAGTGAAGGAGTGTGAGACAATGCTGGACCTTCTTTTCCCAGTGATAGTAATGGGATCCGGTCCT TCATCAGCAAACGATGAGGAAGAAGATGGTGTTGTGAGGGCAGCAGTAATCCCTAAAGAAGTTGGATTGATTGAGAACACGGAAAGCTTATATATGAAGA GCACGATATCAGCGTTGAGAGTTTTGAAGGAGATTCGCAGCGGTAGCTCAACTGTAAGTGTGTACTCTTTGCCGCCGCTTCAAATAAGTGGTTTGGATGA TACTTGGAACAGAGTTCCTGTTCTGGAACAAGTAGCAAAGTAG
AA sequence Show only first row Show all	>Lus10030095 pacid=23172608 polypeptide=Lus10030095 locus=Lus10030095.g ID=Lus10030095.BGIv1.0 annot-version=v1.0 MKFGKSLSNQIDDTLPEWRDKFLSYKELKKRLKFIQPNRAAGSSSDHRPAKRQRLEEAATSGSMTDEEFDFIMLLEAELEKLNAFFVEKEEEYIIRLKEV QDMVARAKDSSEEIFKIRKEIVDFHGEMILLENYSALNYTGLAKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLNKLVKECETMLDLLFPVIVMGSGP SSANDEEEDGVVRAAVIPKEVGLIENTESLYMKSTISALRVLKEIRSGSSTVSVYSLPPLQISGLDDTWNRVPVLEQVAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	0	1
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	1.4	0.9769
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	2.0	0.9690
AT3G43110			unknown protein		Lus10020796 [exp]	3.0	0.9324
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10018364 [exp]	4.5	0.9125
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	4.7	0.8859
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	4.9	0.9149
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	4.9	0.9047
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	5.3	0.9030
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	6.0	0.8931
AT3G19660			unknown protein		Lus10033765 [exp]	6.3	0.8901

Compare expression of checked genes

Lus10030095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.