Plant FIBer expression Database

Lus10030098 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15760 68 / 5e-15 unknown protein
AT1G52565 62 / 8e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005715
[exp]
211 / 7e-71 AT3G15760 79 / 2e-19 unknown protein
Lus10019413
[exp]
100 / 8e-28 AT3G15760 61 / 7e-13 unknown protein
Lus10043269
[exp]
97 / 4e-26 AT3G15760 61 / 1e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G069100
[exp]
131 / 1e-39 AT1G52565 67 / 7e-15 unknown protein
Potri.018G131100
[exp]
122 / 4e-36 AT3G15760 75 / 5e-18 unknown protein
Potri.001G192800
[exp]
81 / 7e-20 AT1G52565 95 / 6e-26 unknown protein
PFAM info
Representative CDS sequence
>Lus10030098 pacid=23172623 polypeptide=Lus10030098 locus=Lus10030098.g ID=Lus10030098.BGIv1.0 annot-version=v1.0
ATGTCTTCTATGCTCTGCTCCCAAGGAGTCGCCGTCGCCACCGCCATGGCCGTCTCCGGTACTGTTATCCTCCTTGCCCTCCGCCTCCAGAAATCCCTCC
CTACAGCCCAATTCTCCCTCCACAACCATCACCACTCTCCGATTTCTCGCTGCCGCTCGCTGCCCACAACCCCGCCGCCTCTCCGATCTTGCATCTCTTC
AGATGAGAAGAAGAGCAAGAAGAGGAGCAAAAAGAAGAAGAAAGTCCACTTCGCGGAGGATGTAGTGGAACCGAGGGGAAACGGAGAAGAATTTAGGAGG
CACTACGACGCCATTGCTGCGGCTGCCAGGATGAGCCGCTCCTCCTCCGCCGACGATTCACAGCCTCAGCGGCGGTCGTCGCGATCAATATCGAGAGACA
GGGGAATCCCAGCGAATAGATTGGCTCTCTACTCGGGCATCCTCAGAGATCGGGGAGTTCAGCGATTAGCCTACTCTCACTGA
AA sequence
>Lus10030098 pacid=23172623 polypeptide=Lus10030098 locus=Lus10030098.g ID=Lus10030098.BGIv1.0 annot-version=v1.0
MSSMLCSQGVAVATAMAVSGTVILLALRLQKSLPTAQFSLHNHHHSPISRCRSLPTTPPPLRSCISSDEKKSKKRSKKKKKVHFAEDVVEPRGNGEEFRR
HYDAIAAAARMSRSSSADDSQPQRRSSRSISRDRGIPANRLALYSGILRDRGVQRLAYSH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15760 unknown protein Lus10030098
[exp]
0 1
AT5G41810 unknown protein Lus10001907
[exp]
2.0 0.9567
AT5G65495 unknown protein Lus10002656
[exp]
3.5 0.9488
AT2G35270 AT-hook GIK, 2-ATH, AHL... GIANT KILLER, Predicted AT-hoo... Lus10030966
[exp]
3.5 0.9533
AT1G01490 Heavy metal transport/detoxifi... Lus10017520
[exp]
3.9 0.9459
AT3G06810 IBR3 IBA-RESPONSE 3, acyl-CoA dehyd... Lus10020908
[exp]
5.5 0.9506
AT2G12646 PLATZ transcription factor fam... Lus10008031
[exp]
7.9 0.9374
AT1G64230 UBC28 ubiquitin-conjugating enzyme 2... Lus10022726
[exp]
8.9 0.9374
AT2G30140 UDP-Glycosyltransferase superf... Lus10026394
[exp]
9.8 0.9414
AT4G27290 S-locus lectin protein kinase ... Lus10014811
[exp]
10.7 0.9440
AT1G76690 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOAT... Lus10013218
[exp]
11.2 0.9406

Lus10030098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.