Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25360 79 / 2e-20 unknown protein AT1G15350 69 / 5e-17 unknown protein AT3G15770 63 / 2e-14 unknown protein AT4G32342 62 / 4e-14 unknown protein AT3G54880 58 / 9e-13 unknown protein AT5G03440 56 / 3e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002164 [exp] 86 / 3e-23 AT5G25360 174 / 3e-56 unknown protein Lus10005466 [exp] 80 / 9e-22 AT5G25360 99 / 6e-28 unknown protein Lus10013824 [exp] 60 / 2e-13 AT3G54880 108 / 1e-31 unknown protein Lus10026537 [exp] 55 / 6e-12 AT5G03440 97 / 5e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G027800 [exp] 79 / 4e-20 AT5G25360 182 / 1e-58 unknown protein Potri.006G068600 [exp] 77 / 7e-20 AT5G25360 194 / 9e-64 unknown protein Potri.006G254000 [exp] 76 / 2e-19 AT5G25360 197 / 3e-65 unknown protein Potri.001G192700 [exp] 73 / 4e-18 AT5G25360 169 / 1e-54 unknown protein Potri.018G130900 [exp] 69 / 1e-16 AT5G25360 140 / 8e-43 unknown protein Potri.008G034600 [exp] 64 / 5e-15 AT3G54880 120 / 8e-37 unknown protein Potri.010G227800 [exp] 61 / 4e-14 AT3G54880 123 / 7e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030101 pacid=23172591 polypeptide=Lus10030101 locus=Lus10030101.g ID=Lus10030101.BGIv1.0 annot-version=v1.0 ATGGTGACACGAGCTAACAACTCTATCTGTTCTTGGATCCGTCACTTTCTGGCTTGTATAAGTTGGAATGCAAGTTATGAAAGTTTGCTTGGGAGCAGAA ACCGTTTTACTCGGCCTGTCCCGCTCTCTGAAATGGTAGATTTTCTAGTGGATGTATGGGAGCAGGAAGGGTTGTATGATTGA
AA sequence Show only first row Show all	>Lus10030101 pacid=23172591 polypeptide=Lus10030101 locus=Lus10030101.g ID=Lus10030101.BGIv1.0 annot-version=v1.0 MVTRANNSICSWIRHFLACISWNASYESLLGSRNRFTRPVPLSEMVDFLVDVWEQEGLYD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25360			unknown protein		Lus10030101 [exp]	0	1
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	6.0	0.8288
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10007322 [exp]	11.5	0.7851
					Lus10006286 [exp]	13.7	0.8105
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	14.2	0.8275
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	18.2	0.8082
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10013362 [exp]	22.2	0.8048
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	24.2	0.8277
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Lus10037221 [exp]	34.2	0.8143
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10007963 [exp]	39.1	0.7678
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037325 [exp]	39.6	0.7860

Compare expression of checked genes

Lus10030101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.