Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25490 670 / 0 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 625 / 0 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 168 / 2e-44 F-box/RNI-like superfamily protein (.1) AT5G27920 139 / 2e-34 F-box family protein (.1) AT5G23340 108 / 2e-25 RNI-like superfamily protein (.1) AT5G01720 100 / 6e-22 RNI-like superfamily protein (.1) AT3G07550 78 / 3e-15 RNI-like superfamily protein (.1.2) AT1G21410 77 / 4e-15 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 76 / 1e-14 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT3G58530 72 / 4e-13 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002165 [exp] 1174 / 0 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 671 / 0 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 669 / 0 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012764 [exp] 165 / 2e-42 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 135 / 1e-32 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10001264 [exp] 130 / 2e-31 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 125 / 1e-29 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 99 / 8e-22 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 97 / 4e-21 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130800 [exp] 909 / 0 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 890 / 0 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G254100 [exp] 737 / 0 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 732 / 0 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 154 / 2e-39 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 130 / 2e-31 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 127 / 2e-30 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 124 / 2e-29 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 110 / 6e-25 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 102 / 4e-23 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10030102 pacid=23172630 polypeptide=Lus10030102 locus=Lus10030102.g ID=Lus10030102.BGIv1.0 annot-version=v1.0 ATGCCTGCTCTTGTTAACTACAATTCCGGTGATGGGGAGATGTATTCTAGGGGCTCATTTCGTGCATGTCCTATGGACATGGCTCAGTTCTGTTCAGTTG GTTCATATGGAGATGTGTACAGCCCAGCTTGCAAGAGGGCTCGCATTAGTTCCTCATTTTCATTTGCCTCCGCCGATGAAATCAACAGAAAACCGTCAAT TGATCTCCTCCCAGATGAGTGTCTCTTCGAGATTCTCAGGCGGGTATCTGGAGGCAAAGAGAGGGGATCTTGTGCTTCCGTGTCCAAGCGGTTGCTTATG GTGTTGAGCAGCATAAAGAGAGCTGAGATTTGCAAGGTAGCAGTTGTCCAGGGTTCTGATGATGTGGAGATGGTGTCTGGTGATGAAAACGTGGAGGTCG AAGATGATGGCTGTCTCACTAGGTCTCTAGAAGGAAGGAAAGCAACGGATATTAGACTTGCTGCTATTGCTGTTGGCACAAGCAGCCGTGGAGGTCTTGG GAAACTTTCCATTCGTGGGAAGAACTCTGGTCTTGGAGTAACTGATCTTGGTCTATCAGCAATAGCCTGTGGCTGCCCTTCTCTCAGAACTCTTTCTCTG TGGAATGTTCCTTTGGTTGGCGATCATGGGTTGTCTGAGATTGCTAAGGAATGCCATTCCCTAGAAAAGCTTGATCTTTCCCATTGTCCTTCAATTTCTG ATAAGGGTTTGGCTGCAATCGCTCAGAAGTGCAAAAATTTGTCGGCTTTGAGTATTGAATCCTGCTCAAGCATCGGTAATGCAGGTTTAGAAGCGATTGG GAAGTTATGTCCCAAACTTCAATCTGTTTCCATCAAAGATTGCCCGCTTGTTGGAGATCATGGTCTATCAGCTCTATGCTCGTCAGCTCCTGCGTTATCG AAGGTTAAGCTTCAGTCATTGAACATCACAGATTTCTCTCTTGCAGTAATTGGACATTATGGCAAGGCTGTTACTAGCCTTGTCCTTGTTGGTCTCCAGT ATGTCAGCGAGAAGGGCTTTTGGGTCATGGGAAGTGCTAAGGGCTTACAGAAGTTGATCTCTCTGACGATCACTTCTTGCAGGGGAACAACAGATCTCGG CCTTGAAGCTATTGCCAAAGGTTGCTTGAACCTCAAACAGATTTGCATTCGCAAATGTAGCTTTGTCTCTGATAATGGATTGATCAATTTTACCAAGGCA GCAGCAGTAGCTTCTCTTGAGAGCCTGCAGTTGGAGGAGTGTAACAGGGTTACTGAATTGGGCATCATTGGCGCAATCGCAAACTGTGGAGCTAAATTGA AAACACTTAGCCTAGTGAGGTGCATGGGAATCAAGGATACATCTTCAGGAATTCCATTACCCTCTCAATGTAGCTCGCTTCGCTCCCTTTCCATCAAGAG CTGCCCCGGTTTTGGCAACCTTGGGTTGGCTTTGGTAGGGAAGTTATGCCCACAACTTCAGCATCTGGATTTATGCGGGCTAAGTGGAATCACCGATGCT GGGCTTCTACCACTTTTGGAGAGTTGCAAAGCTGGTCTGGTGAAGGTTAACCTCAGTGAATGTCTGAACTTGACAGATGATGTGGTCTCGGCCTTGGCCA GGCTACACGGTGGAACAACACTCGAGGTTTTGAATCTGGATGGTTGCAGGAAGATCACTGACGTTAGTTTGGCATCTATTGCCGAATACTGCTTATTCCT GAGTGATCTAGATGTGTCCAAGTGTTCAATTTCAGATTCAGGCATCGGTTACCTGTCGAGTGCCGAGCAGCTAAACCTTCAAGTTCTTTCAATGTCAAGT TGCTCTGAAGTTTCCAACAAGGCATTGCCTTGCCTAAAGAGAATTGGAAGGACTCTTGTGGGTTTAAACCTCCAACATTGCAATTCCATTAGCAGCAAGA CGATTGAGCTTCTGGTGGGAAGCTTGTGGAGATGTGACATCCTCGCCTAA
AA sequence Show only first row Show all	>Lus10030102 pacid=23172630 polypeptide=Lus10030102 locus=Lus10030102.g ID=Lus10030102.BGIv1.0 annot-version=v1.0 MPALVNYNSGDGEMYSRGSFRACPMDMAQFCSVGSYGDVYSPACKRARISSSFSFASADEINRKPSIDLLPDECLFEILRRVSGGKERGSCASVSKRLLM VLSSIKRAEICKVAVVQGSDDVEMVSGDENVEVEDDGCLTRSLEGRKATDIRLAAIAVGTSSRGGLGKLSIRGKNSGLGVTDLGLSAIACGCPSLRTLSL WNVPLVGDHGLSEIAKECHSLEKLDLSHCPSISDKGLAAIAQKCKNLSALSIESCSSIGNAGLEAIGKLCPKLQSVSIKDCPLVGDHGLSALCSSAPALS KVKLQSLNITDFSLAVIGHYGKAVTSLVLVGLQYVSEKGFWVMGSAKGLQKLISLTITSCRGTTDLGLEAIAKGCLNLKQICIRKCSFVSDNGLINFTKA AAVASLESLQLEECNRVTELGIIGAIANCGAKLKTLSLVRCMGIKDTSSGIPLPSQCSSLRSLSIKSCPGFGNLGLALVGKLCPQLQHLDLCGLSGITDA GLLPLLESCKAGLVKVNLSECLNLTDDVVSALARLHGGTTLEVLNLDGCRKITDVSLASIAEYCLFLSDLDVSKCSISDSGIGYLSSAEQLNLQVLSMSS CSEVSNKALPCLKRIGRTLVGLNLQHCNSISSKTIELLVGSLWRCDILA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10030102 [exp]	0	1
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	1.0	0.9470
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	3.2	0.8886
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10040222 [exp]	3.2	0.8575
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	3.5	0.8561
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	4.2	0.8381
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	4.5	0.8496
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012499 [exp]	7.5	0.8528
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	10.1	0.8834
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	10.4	0.8514
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10042549 [exp]	10.6	0.8244

Compare expression of checked genes

Lus10030102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.