Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20190 161 / 1e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 142 / 4e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 132 / 4e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 122 / 4e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 96 / 1e-22 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29670 81 / 5e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 78 / 9e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 70 / 3e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002166 [exp] 441 / 5e-157 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019409 [exp] 237 / 1e-77 AT5G20190 164 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043266 [exp] 224 / 7e-73 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002013 [exp] 137 / 4e-38 AT4G32340 152 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 129 / 2e-34 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 125 / 2e-33 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 119 / 3e-30 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 119 / 4e-30 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000257 [exp] 118 / 7e-30 AT1G04530 179 / 3e-52 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130100 [exp] 242 / 4e-79 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 231 / 7e-75 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 222 / 5e-71 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G254300 [exp] 152 / 9e-45 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 127 / 8e-34 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 121 / 2e-32 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 115 / 4e-29 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 109 / 4e-27 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 79 / 4e-16 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 78 / 6e-16 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030103 pacid=23172625 polypeptide=Lus10030103 locus=Lus10030103.g ID=Lus10030103.BGIv1.0 annot-version=v1.0 ATGCTTCTACGAAGCTCATCTACTCCGATACTTAAATCTTGGATCCCACACTCCAAAGATCCACAGCCATCGCCGGAACCCGATTTTTCCCGCCAAATTA GGAGGACACAATCCATTACCCTAACCGCCTCGTCTTCCAGCCACAATTCTCCCTCGTCATTCTCTCCCCGCGGCCATTCCTTCAGGAAGATGACGAGGGC GCTGTCGGAGGCCGATCTCCGGGAGCCCAAGAGGAAATCAACCAACGGGTTATTACTGAACGGCGTCTCCGTCGAGGAGAAGGACGAGGAAGAGGAAAAA TTGGCGGCCTGGGGTTGCGGGTTTTTCCTGGGATCAAATGGGTTGGGCGAAAGTTACAACGCCGAGAGTGTGTTATCGACGCTTTCGGTGGGCGACGGAG CTTCTGGAGGCGGCGGGAAAATCGGGACTGGCGGCGGGAGTCCCGGCGGCGGATATTGGAGCTCGGAATTCTGGGATTCGAATTACAAGACGGAGGCCTA CTACGAAAAGATGATCGAAGCGAATCCTGGGAATTCCCTCCTCCTTACGAATTACGCAAAGTTCTTGAAAGAGGTTCGTGGGGATTTGGTCAGGGCAGAG GAGTATTGTGGGAGAGCAATCCTGGAGAATCCGAACAATGGCGATGTTCTTTCCATGTACGCTGATTTAGTATGGAAGAGCCACAAGGATTCATCTCGAG CTGAAAGCTATTTCAATCGAGCTGTTGAGGCTTCCGCTGAAGATTGCTATGTTCTTGCTTCATATGCTAGTTTTCTGTGGGATTCTGATGAAGAAGAAGA AGTGGAAAAGGGAACGGATGGTATACAAGAGATGAACAAATTGTCATCACCGAATTTCTTCCATGGAGTTTCAGCTCCGTATCCTCCTTTGGCTGCTGCT TCTTAA
AA sequence Show only first row Show all	>Lus10030103 pacid=23172625 polypeptide=Lus10030103 locus=Lus10030103.g ID=Lus10030103.BGIv1.0 annot-version=v1.0 MLLRSSSTPILKSWIPHSKDPQPSPEPDFSRQIRRTQSITLTASSSSHNSPSSFSPRGHSFRKMTRALSEADLREPKRKSTNGLLLNGVSVEEKDEEEEK LAAWGCGFFLGSNGLGESYNAESVLSTLSVGDGASGGGGKIGTGGGSPGGGYWSSEFWDSNYKTEAYYEKMIEANPGNSLLLTNYAKFLKEVRGDLVRAE EYCGRAILENPNNGDVLSMYADLVWKSHKDSSRAESYFNRAVEASAEDCYVLASYASFLWDSDEEEEVEKGTDGIQEMNKLSSPNFFHGVSAPYPPLAAA S

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10030103 [exp]	0	1
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10035042 [exp]	2.6	0.9301
AT5G57345			unknown protein		Lus10001438 [exp]	6.2	0.9218
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10028633 [exp]	6.7	0.9154
AT1G02630			Nucleoside transporter family ...		Lus10030104 [exp]	7.7	0.8902
AT4G32480			Protein of unknown function (D...		Lus10006177 [exp]	8.1	0.8994
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10036121 [exp]	8.9	0.8742
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	12.0	0.9118
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	13.5	0.8860
AT5G43260			chaperone protein dnaJ-related...		Lus10037022 [exp]	13.5	0.8717
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	13.9	0.8941

Compare expression of checked genes

Lus10030103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.