Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02630 478 / 4e-169 Nucleoside transporter family protein (.1.2) AT1G70330 337 / 8e-113 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G61630 149 / 7e-41 ATENT7 equilibrative nucleoside transporter 7 (.1) AT4G05130 140 / 2e-37 ATENT4 equilibrative nucleoside transporter 4 (.1) AT4G05120 139 / 4e-37 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05110 136 / 6e-36 ATENT6 equilibrative nucleoside transporter 6 (.1) AT3G09990 134 / 2e-35 Nucleoside transporter family protein (.1) AT4G05140 133 / 7e-35 Nucleoside transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013002 [exp] 343 / 2e-115 AT1G70330 534 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10029162 [exp] 338 / 4e-113 AT1G70330 551 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10039741 [exp] 155 / 7e-43 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018523 [exp] 152 / 1e-41 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018413 [exp] 149 / 2e-40 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002589 [exp] 145 / 2e-39 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002167 [exp] 112 / 1e-30 AT1G02630 95 / 3e-25 Nucleoside transporter family protein (.1.2) Lus10018414 [exp] 114 / 2e-27 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 91 / 1e-19 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130000 [exp] 532 / 0 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.006G068100 [exp] 513 / 0 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.012G058900 [exp] 334 / 7e-112 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.018G130200 [exp] 261 / 7e-87 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2) Potri.019G118400 [exp] 142 / 2e-38 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032400 [exp] 136 / 5e-36 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032300 [exp] 130 / 1e-33 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 119 / 6e-30 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.011G041112 [exp] 109 / 3e-26 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF01733 [flax] [poplar] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Lus10030104 pacid=23172619 polypeptide=Lus10030104 locus=Lus10030104.g ID=Lus10030104.BGIv1.0 annot-version=v1.0 ATGGAAGTTGAGAAAGGACCTGCTATTGTTGCTCTAGCTGAGCCAAAGGATGCTTACAAAGTAGCTTACATAATCCATTTCTTGCTTGGTGCTGGCAACT TGCTTCCATGGAACGCATTCATCACCGCCATCGATTACTTCGGGTCTCTTTACCCAACCAAACACATTGAGAAGGTATTTGCAGTGGCTTACATGACCTC TTCTGTGCTGGTTCTGGTCATGATCATGAGTCAAGGTAGCTGGAGGAGCAGTAGGATGAGTTGCAGGCTAAAGATGAACTTGGGTTTCTCTTTGTTTGTT CTCTCCATGATGGTTGCTCCAACGCTGGATTGGAGCAGCAGTAGCTCAAGCCAGAGGCCTGCTGGAGCGTACGGAGTGACTGTTGCATCAATTCTGGTCT GTGGATTTGCCGATGGGTTGATTGCAGGAACCTTGATTGGCTTAGCTGGAAAGCTCCCAAAGCAATACATGCAGGCAGTTTTTGCTGGAACTGCCAGCTC AGGAGTTCTTGTTTCCATCTTGAGGATTATCACAAAGGCCTTGCTTCCTCAGACACCTCAAGGTCTCCAAACTAGTGCACATTTTTACTTCATCGTCAGC ACCATTATTCTCCTGTGCTGTATTTTCCTCTGCAACTTGTTGTACAAATTGCCTGTGATGGAACATCACCACAAGCGGGTCGCTTGTGGGGATAATTTGT TCCATGTAAGGCCGAAATTCTGGGGTGTGGCGAGGAAAATCCAGTGGCCAGGTTCCGGTATTCTAACCATCTACGTCGTGACCCTGTCTATCTTCCCAGG ATTCCTAGCCGAAGATCTTAAATCTAACATGTTGAGTGACTGGTATCCACTCCTGCTAATAACAATATACAATGCATCAGATTTAATAGGCAAGTCGATA ACAGCAGTCTATGTTTTGAAGAGCATCAAGACTGCCACCTGGGGTTGTGTTCTGAGGCTACTGTTCTATCCGCTCTTCGCAGCATGCCTCCATGGACCAA CATGGCTGAAAACAGAAGTTCCAGTTGTGGCTCTAACCTTCATGCTAGGCATCACAAATGGGTATTTGACAAGTGTTCTTATGATTCTCGCCCCAAAATC AGTTCCAGGTTCAGAGGCAGAGTTGGCTGCAATTGTAATGGTTGTATTCCTGGGGATTGGCTTAGTCTGTGGATCTGTGCTTGGCTGGTTTTGGATCATA TGA
AA sequence Show only first row Show all	>Lus10030104 pacid=23172619 polypeptide=Lus10030104 locus=Lus10030104.g ID=Lus10030104.BGIv1.0 annot-version=v1.0 MEVEKGPAIVALAEPKDAYKVAYIIHFLLGAGNLLPWNAFITAIDYFGSLYPTKHIEKVFAVAYMTSSVLVLVMIMSQGSWRSSRMSCRLKMNLGFSLFV LSMMVAPTLDWSSSSSSQRPAGAYGVTVASILVCGFADGLIAGTLIGLAGKLPKQYMQAVFAGTASSGVLVSILRIITKALLPQTPQGLQTSAHFYFIVS TIILLCCIFLCNLLYKLPVMEHHHKRVACGDNLFHVRPKFWGVARKIQWPGSGILTIYVVTLSIFPGFLAEDLKSNMLSDWYPLLLITIYNASDLIGKSI TAVYVLKSIKTATWGCVLRLLFYPLFAACLHGPTWLKTEVPVVALTFMLGITNGYLTSVLMILAPKSVPGSEAELAAIVMVVFLGIGLVCGSVLGWFWII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02630			Nucleoside transporter family ...		Lus10030104 [exp]	0	1
AT5G57345			unknown protein		Lus10001438 [exp]	3.6	0.9286
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	3.7	0.9044
AT3G55760			unknown protein		Lus10021897 [exp]	4.6	0.9021
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10017117 [exp]	7.3	0.8895
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10030103 [exp]	7.7	0.8902
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	7.9	0.8724
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10002103 [exp]	9.2	0.8786
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10007646 [exp]	11.4	0.8836
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	11.5	0.8940
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10024721 [exp]	12.6	0.8790

Compare expression of checked genes

Lus10030104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.