Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26580 162 / 2e-49 YABBY YAB5 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) AT1G08465 130 / 7e-37 YABBY YAB2 YABBY2, Plant-specific transcription factor YABBY family protein (.1) AT2G45190 123 / 2e-33 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) AT1G23420 107 / 2e-27 YABBY INO, YAB4 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) AT1G69180 87 / 3e-20 YABBY CRC CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1) AT4G00180 77 / 1e-16 YABBY YAB3 YABBY3, Plant-specific transcription factor YABBY family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019407 [exp] 182 / 1e-56 AT2G26580 228 / 8e-77 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Lus10043264 [exp] 184 / 2e-53 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032240 [exp] 119 / 5e-32 AT2G45190 193 / 1e-61 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10024603 [exp] 119 / 1e-31 AT2G45190 190 / 2e-60 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10010361 [exp] 84 / 2e-18 AT2G45190 171 / 4e-53 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10008374 [exp] 82 / 2e-18 AT1G08465 84 / 9e-21 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Lus10030892 [exp] 75 / 1e-16 AT1G23420 102 / 2e-28 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Lus10036496 [exp] 76 / 5e-16 AT2G45190 183 / 2e-58 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Lus10029135 [exp] 74 / 3e-15 AT1G23420 200 / 9e-65 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G129800 [exp] 180 / 4e-56 AT2G26580 250 / 5e-86 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.006G067800 [exp] 171 / 1e-52 AT2G26580 253 / 5e-87 YABBY5, plant-specific transcription factor YABBY family protein (.1.2) Potri.014G066700 [exp] 140 / 2e-40 AT2G45190 277 / 3e-95 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.009G000100 [exp] 135 / 5e-39 AT1G08465 215 / 3e-72 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.002G145100 [exp] 133 / 1e-37 AT2G45190 265 / 2e-90 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.003G112800 [exp] 130 / 1e-36 AT2G45190 243 / 1e-81 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.001G120200 [exp] 124 / 3e-34 AT2G45190 236 / 4e-79 YABBY1, FILAMENTOUS FLOWER, ABNORMAL FLORAL ORGANS, Plant-specific transcription factor YABBY family protein (.1) Potri.008G189000 [exp] 114 / 3e-30 AT1G23420 213 / 7e-70 INNER NO OUTER, Plant-specific transcription factor YABBY family protein (.1) Potri.001G214700 [exp] 114 / 3e-30 AT1G08465 183 / 8e-59 YABBY2, Plant-specific transcription factor YABBY family protein (.1) Potri.008G097800 [exp] 110 / 2e-29 AT1G69180 157 / 3e-49 CRABS CLAW, Plant-specific transcription factor YABBY family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF04690 [flax] [poplar] YABBY YABBY protein
Representative CDS sequence Show only first row Show all	>Lus10030105 pacid=23172596 polypeptide=Lus10030105 locus=Lus10030105.g ID=Lus10030105.BGIv1.0 annot-version=v1.0 ATGTCTAGTAGCAGCTGCGTAGGTGAGATGGTGGCTCATGAGCAACTCTGCTACATCCCTTGTAACTTCTGCAACATTGTTCTTGCGGTGAGCGTGCCGT ACAGCAATGTGATGGATGTAGTGACAGTGAGGTGCGGCCACTGCACTAATCTATGGTCTGTAAACATGGCCGCCGCTTTCCCTTACTCTTCCCTTTCTTC TCCTCCTCCTCCTCCTCCTCTTCCTCACCTCCAGTACCACCAGGGTGGTGGAAATCATGGCTTATTTCCAGCGGCTGGCTCTTCTGCTTCTCCTTCTCCT CCTCCCGCCGCCGCCACCGCCACGAACAAACGATCATCAGCACCACCTTCCCGCAGTCTTCCTTATAACGACCCTCGAGTTCCTAATCGACCTCCAGAAA AGCGCCAGCGAGTTCCATCTGCGTACAACCAATTCATCAAGGAAGAGATACAGAGGATTAAGGCGAATAAGCCGGACATCAGCCACCGTGAAGCTTTCAG CACCGCCGCTAAAAATTCGAGATTGGTTAGCTTGGATCTATGGAAGCTCACCAGGGGAATGCAATCTTGTACTGAGATTCGGCTATTCAGCGTGATTTCA ACCCCCTGCATTAGCCCTCATGATGGAATTCTGTCCCATATGCCACCCCCAACGATTCGTCACTGGCGAATAATATGTGATGGTTCATTTAAACACAATC TCCAGAAGGGTGCTATCAGTGTACGAGCCACCATCTCTATCGCGGTTACCTCTCTCATGACCGCCGCTGACTCTACTCCTTCCACAAATGCAACGCTAGA AGCTCACACCAAAGTTTTCGAAACTCGTGAAAAGGACGTTCTTACATGGCAGACCAACAATGCCAAGTTGGAAACCGAGTATGAACTCGCTAAACTTAGT CAGGGTGATCTCGATATCCATAGCTACTATCTAGTCGCTAGCCAACTCTGGACATAG
AA sequence Show only first row Show all	>Lus10030105 pacid=23172596 polypeptide=Lus10030105 locus=Lus10030105.g ID=Lus10030105.BGIv1.0 annot-version=v1.0 MSSSSCVGEMVAHEQLCYIPCNFCNIVLAVSVPYSNVMDVVTVRCGHCTNLWSVNMAAAFPYSSLSSPPPPPPLPHLQYHQGGGNHGLFPAAGSSASPSP PPAAATATNKRSSAPPSRSLPYNDPRVPNRPPEKRQRVPSAYNQFIKEEIQRIKANKPDISHREAFSTAAKNSRLVSLDLWKLTRGMQSCTEIRLFSVIS TPCISPHDGILSHMPPPTIRHWRIICDGSFKHNLQKGAISVRATISIAVTSLMTAADSTPSTNATLEAHTKVFETREKDVLTWQTNNAKLETEYELAKLS QGDLDIHSYYLVASQLWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10030105 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	2.4	0.9609
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	3.7	0.9581
AT5G51560			Leucine-rich repeat protein ki...		Lus10031702 [exp]	3.9	0.9411
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	7.2	0.9362
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10005313 [exp]	7.2	0.9086
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10020059 [exp]	7.4	0.9310
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	8.0	0.9142
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	8.5	0.9178
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10007650 [exp]	8.8	0.9165
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10009336 [exp]	9.9	0.9061

Compare expression of checked genes

Lus10030105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.