Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15790 145 / 3e-41 MBD11, ATMBD11 methyl-CPG-binding domain 11 (.1) AT1G15340 142 / 2e-38 MBD10 methyl-CPG-binding domain 10 (.1.2) AT2G18340 56 / 2e-08 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1.2) AT2G36640 55 / 5e-08 ATECP63 embryonic cell protein 63 (.1) AT3G53040 44 / 0.0001 late embryogenesis abundant protein, putative / LEA protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002168 [exp] 293 / 2e-97 AT3G15790 136 / 3e-38 methyl-CPG-binding domain 11 (.1) Lus10043263 [exp] 169 / 6e-50 AT3G15790 141 / 1e-40 methyl-CPG-binding domain 11 (.1) Lus10019406 [exp] 160 / 1e-46 AT1G15340 137 / 3e-39 methyl-CPG-binding domain 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G129700 [exp] 144 / 3e-40 AT1G15340 134 / 7e-37 methyl-CPG-binding domain 10 (.1.2) Potri.006G067700 [exp] 142 / 2e-39 AT1G15340 137 / 2e-37 methyl-CPG-binding domain 10 (.1.2) Potri.001G192300 [exp] 54 / 6e-09 AT1G15340 61 / 9e-12 methyl-CPG-binding domain 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10030108 pacid=23172599 polypeptide=Lus10030108 locus=Lus10030108.g ID=Lus10030108.BGIv1.0 annot-version=v1.0 ATGGCTAGCTCGGTTGAGAAGCAAGAGAATACTACTACTCCAATGAAAGACGACGAGGATTTCTCTGTCGAGCTTTCTGCACCGCCCGGCTGGAAAAAAA TGTTCTCACCCAAGAAGAAAAAGAATGAGATCACATTCATTGCCCCGACAGGGGAGGAAATCACTGGTAAACGACAGTTGGATCAGTACCTCAAAGCACA TCCCGGTGGTCCAGCAGCAGCTGAGTTCGATTGGAGCACCGGCGAGACCCCAAGACGATCGGCAAGGATCAGTGAGAAGGTGAAGGCGACTCCATCTCCA AATGAGCCCTTAAAGAAGAGAGGCAAGAAGTCACCGGCTACCAAAAAGGAAACCAAAGAAATTGTAATTGGTGATGAAGTAACTGAGGAGGCCAAAGACA ATACGGAGAAAGCTGGAGAAACTAAGAAGGATGGTGCAGAAACTAAGAAGGATGTTGCTGAGGAGGCCAAAGACTGTAATATGGAGAAAGCTGGAGAAAC TAAGAAGGATGGTGCTGAGGAGGCCAAAGACATTAATATGGAGGAAGCTGGAGAAACTAAGAAGGATGGGGCAGAAACTAAGAAGGATGATGCTGAGGAG GCCAAAGACATTAATATGGAGGAAGCTGGAGAAACTAAGAAGGATGGGGCAGAAACTAAGAAGGATGATGCTGAGGAGGCCAAAGACATTAATATGGAGG AAGCTGGAGAAACTAAGAAGGATGGGGCAGAAACTAAGAAGGATGATGCTGAGGAGGCCAAAGACATTAATATGGAGGAAGCTGGAGAAACTAAGAAGGA TGGGGCAGAAACTAAGAAGGATGATGCTGAGGAGGCCAAAGACATTAATATGGAGGAAGCTGGAGAAACTAAGAAGGATGGGGCAGAAACTAAGAAGGAT GATGCTGAGGAGGCCAAAGACATTAATATGGAGGAAGCTGGAGAAACTAAGAAGGATGGGGCAGAAACTAAGAAGGATGATGCTGAGGAGGCCAAAGACA TTAATATGGAGGAAGCTGGAGAAACTAAGAAGGATGGGGCAGAAACTAAGAAGGATGATGCTGAGGAGGCCAAAGACATTAATATGGAGGAAGCTGGAGA AACTAAGAAGGATGGGGCAGAAACTAAGAAGGATGATGCTGAGGAGGCCTAG
AA sequence Show only first row Show all	>Lus10030108 pacid=23172599 polypeptide=Lus10030108 locus=Lus10030108.g ID=Lus10030108.BGIv1.0 annot-version=v1.0 MASSVEKQENTTTPMKDDEDFSVELSAPPGWKKMFSPKKKKNEITFIAPTGEEITGKRQLDQYLKAHPGGPAAAEFDWSTGETPRRSARISEKVKATPSP NEPLKKRGKKSPATKKETKEIVIGDEVTEEAKDNTEKAGETKKDGAETKKDVAEEAKDCNMEKAGETKKDGAEEAKDINMEEAGETKKDGAETKKDDAEE AKDINMEEAGETKKDGAETKKDDAEEAKDINMEEAGETKKDGAETKKDDAEEAKDINMEEAGETKKDGAETKKDDAEEAKDINMEEAGETKKDGAETKKD DAEEAKDINMEEAGETKKDGAETKKDDAEEAKDINMEEAGETKKDGAETKKDDAEEAKDINMEEAGETKKDGAETKKDDAEEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10030108 [exp]	0	1
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10002168 [exp]	1.4	0.9395
AT1G23000			Heavy metal transport/detoxifi...		Lus10032445 [exp]	2.0	0.9442
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10007721 [exp]	2.0	0.9171
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001172 [exp]	6.9	0.9202
					Lus10011220 [exp]	10.7	0.9156
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019871 [exp]	11.6	0.8845
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	12.0	0.8826
AT1G32730			unknown protein		Lus10001085 [exp]	12.6	0.8321
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10021934 [exp]	13.3	0.8568
AT3G20260			Protein of unknown function (D...		Lus10034809 [exp]	14.1	0.8994

Compare expression of checked genes

Lus10030108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.