Plant FIBer expression Database

Lus10030109 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02530 206 / 8e-67 chloroplast thylakoid lumen protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G067600
[exp]
223 / 2e-73 AT4G02530 209 / 2e-68 chloroplast thylakoid lumen protein (.1)
Potri.018G129600
[exp]
194 / 3e-62 AT4G02530 166 / 2e-51 chloroplast thylakoid lumen protein (.1)
PFAM info
Representative CDS sequence
>Lus10030109 pacid=23172602 polypeptide=Lus10030109 locus=Lus10030109.g ID=Lus10030109.BGIv1.0 annot-version=v1.0
ATGGCAACACCATCTCTTTCAACTGCCAACTCCTGCAAATCTCTCCCTTGCTCAACTTCTCCACTACCAGCATCGTCACAATCACCATATTCTTCTTTTC
TTGCATTTCTACATCCAAGAACTACTACTGCCAGCAAACAACATCCCAATTCCTGCAGATGCTTCAGTGAGTCATCAGAAGAATCACCACCCATTTCCCC
TGTGGTGACCAGCAGAAGAAGAAGCCTAACGTCAATCTGCTTACTCACTGCTGCTTCTTTCTCATCACTACTGCTCAATACTAATTCTGGTAATGCTGCT
ATTCTGGAAGCCGATGAAGATGATGAGCTGATGGAGAAAATAAAGCAGGACAGAAAGAAGAGGATTGAGAGGCAAGCACTTCTTACTTCTTCCAAACAAG
AAACAGGCTATTTGCAAGAAGTGGTGTTCAAACTGAGCAAAGCAGGCCAAGCCATAGAGAAGAGTGATTTAGCAGCTGCAACTTCAGTTCTTGGCAAAAA
CACTGATACTGATTGGGTGCAAAAGGCGAATCTAGCCTTCTCCAAGCTAAGCTTTGACCCTGAGGAGAAAACCCAAGTGGATGCATTCAATTCTTCATTA
GCTTCATTGATTTCATCAGTTGTTGGCAATGACATGGAGTCCTCCAAGGATGCGTTCGTTGCATCAGCCACGGCTTTTGAAAAATGGACCAACTTGACGG
GCATAGTTAGCCAGCTCAAAGGTCTCTGA
AA sequence
>Lus10030109 pacid=23172602 polypeptide=Lus10030109 locus=Lus10030109.g ID=Lus10030109.BGIv1.0 annot-version=v1.0
MATPSLSTANSCKSLPCSTSPLPASSQSPYSSFLAFLHPRTTTASKQHPNSCRCFSESSEESPPISPVVTSRRRSLTSICLLTAASFSSLLLNTNSGNAA
ILEADEDDELMEKIKQDRKKRIERQALLTSSKQETGYLQEVVFKLSKAGQAIEKSDLAAATSVLGKNTDTDWVQKANLAFSKLSFDPEEKTQVDAFNSSL
ASLISSVVGNDMESSKDAFVASATAFEKWTNLTGIVSQLKGL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G02530 chloroplast thylakoid lumen pr... Lus10030109
[exp]
0 1
AT5G57030 LUT2 LUTEIN DEFICIENT 2, Lycopene b... Lus10000221
[exp]
1.7 0.9625
AT2G01755 unknown protein Lus10005230
[exp]
2.0 0.9601
AT1G74070 Cyclophilin-like peptidyl-prol... Lus10009619
[exp]
3.3 0.9337
AT3G18890 AtTic62 translocon at the inner envelo... Lus10042346
[exp]
4.5 0.9466
AT5G54190 PORA protochlorophyllide oxidoreduc... Lus10039810
[exp]
5.2 0.9520
AT1G68590 Ribosomal protein PSRP-3/Ycf65... Lus10021693
[exp]
6.3 0.9463
AT2G36145 unknown protein Lus10022687
[exp]
6.5 0.9430
AT1G15980 PnsB1, NDH48, N... Photosynthetic NDH subcomplex... Lus10026086
[exp]
8.5 0.9355
AT5G51545 LPA2 low psii accumulation2 (.1) Lus10031710
[exp]
9.3 0.9182
AT4G17560 Ribosomal protein L19 family p... Lus10023720
[exp]
11.4 0.9347

Lus10030109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.