Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80530 259 / 5e-83 Major facilitator superfamily protein (.1) AT4G34950 157 / 3e-44 Major facilitator superfamily protein (.1) AT2G16660 150 / 1e-41 Major facilitator superfamily protein (.1) AT5G50520 140 / 4e-38 Major facilitator superfamily protein (.1) AT5G50630 140 / 4e-38 Major facilitator superfamily protein (.1) AT2G39210 130 / 6e-34 Major facilitator superfamily protein (.1) AT3G01930 124 / 3e-32 Major facilitator superfamily protein (.1.2) AT2G28120 124 / 4e-32 Major facilitator superfamily protein (.1) AT5G14120 120 / 1e-30 Major facilitator superfamily protein (.1) AT1G74780 112 / 6e-28 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001678 [exp] 398 / 9e-137 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 275 / 4e-89 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 272 / 1e-87 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 271 / 3e-87 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 269 / 2e-86 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 158 / 2e-44 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 156 / 1e-43 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10025123 [exp] 146 / 6e-40 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10035203 [exp] 137 / 2e-36 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060900 [exp] 343 / 2e-115 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 295 / 6e-97 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 290 / 6e-95 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 171 / 2e-49 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 155 / 3e-43 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 154 / 7e-43 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.012G098900 [exp] 146 / 5e-40 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 132 / 6e-35 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 129 / 7e-34 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 126 / 1e-32 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10030111 pacid=23172559 polypeptide=Lus10030111 locus=Lus10030111.g ID=Lus10030111.BGIv1.0 annot-version=v1.0 ATGCCGGCTCCGGCTATGACTACCCCGGTCAAGGCAGGGACACGGCCACCGTGGGTCGGACTCGGAGCAGCGGTCTGCATCCAAATTGCATCTGGGAATG CCTACACCTTCCCACTCTACTCACATTCCTTAAAATCGGTTCTGGGTTTCAACCAGCAGCAACTCACCATGCTCGGAGTCGCTAATGACATCGGCGAGAA TGTCGGACTGATTCCTGGTATTGCCTGCAACTATTTCCCTCCGTGGGTTGTTCTCCTTTTTGGCTCTTTTGCTTGCTTCTTTGGCTATGGCGTTCTCTGG CTCTCCCTTAGCCGCACCATCGTGTCCTTGCCCTACTGGTTGCTATGGATTGCCCTCTGCGTGGCTACTAACAGCAGTGCATGGTTAAGTACTGCTGTCC TTGTGACCAACATGAGGAACTTTCCTCTGAGTAGAGGCACAGTCGCTGGTATTCTCAAAGGATATGGAGGGATCAGTGCTGCAGTTTTCACCGAAATTTA CACCATCTTGCTCCATGGTTCCTCCTCCAAGCTGCTGGTGTTCCTCGCACTGGGAATCCCCATTCTCTGCTTTGCTGCAATGTACTTCGTCAGAGCTTGT ACTGAATCCTCCGGAAATAACCCCTTGCGAAAATTCTCATTTCCTTTTCATCCAAGGAGTTCTAGTCGTTCTTGGCATATACGTCCTGGCAACAACCATA TTGGATCACTTGCTTGCTCTGAATCTCGTGGTTTGTTACACATTTCTGGGAATAATGTTGGCCCTCCTCCTTGCTCCTCTAGCTGTTCCAATCAGGATGA CAATTGCTCGGGGCAAATCGTTGTCCATCGAGGAGGAGAAAACTGA
AA sequence Show only first row Show all	>Lus10030111 pacid=23172559 polypeptide=Lus10030111 locus=Lus10030111.g ID=Lus10030111.BGIv1.0 annot-version=v1.0 MPAPAMTTPVKAGTRPPWVGLGAAVCIQIASGNAYTFPLYSHSLKSVLGFNQQQLTMLGVANDIGENVGLIPGIACNYFPPWVVLLFGSFACFFGYGVLW LSLSRTIVSLPYWLLWIALCVATNSSAWLSTAVLVTNMRNFPLSRGTVAGILKGYGGISAAVFTEIYTILLHGSSSKLLVFLALGIPILCFAAMYFVRAC TESSGNNPLRKFSFPFHPRSSSRSWHIRPGNNHIGSLACSESRGLLHISGNNVGPPPCSSSCSNQDDNCSGQIVVHRGGEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80530			Major facilitator superfamily ...		Lus10030111 [exp]	0	1
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10022539 [exp]	4.7	0.7745
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	8.9	0.7983
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	28.2	0.7312
AT5G63540		BLAP75, ATRMI1	RECQ MEDIATED INSTABILITY 1, D...		Lus10016747 [exp]	37.9	0.7406
AT5G66800			unknown protein		Lus10019352 [exp]	38.4	0.7513
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10034972 [exp]	47.7	0.7013
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10034742 [exp]	47.8	0.7280
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10014728 [exp]	49.2	0.7301
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	52.2	0.7131
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	53.2	0.7251

Compare expression of checked genes

Lus10030111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.