Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80530 223 / 2e-69 Major facilitator superfamily protein (.1) AT4G34950 167 / 3e-48 Major facilitator superfamily protein (.1) AT2G16660 149 / 4e-42 Major facilitator superfamily protein (.1) AT5G14120 143 / 1e-39 Major facilitator superfamily protein (.1) AT3G01930 136 / 1e-37 Major facilitator superfamily protein (.1.2) AT5G50520 130 / 4e-35 Major facilitator superfamily protein (.1) AT5G50630 130 / 4e-35 Major facilitator superfamily protein (.1) AT1G18940 116 / 4e-30 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G39210 117 / 6e-30 Major facilitator superfamily protein (.1) AT1G74780 115 / 9e-30 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001678 [exp] 317 / 6e-106 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 249 / 9e-80 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 249 / 1e-79 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 239 / 7e-76 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 238 / 3e-75 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 154 / 2e-43 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 153 / 3e-43 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10023961 [exp] 133 / 7e-36 AT5G14120 598 / 0.0 Major facilitator superfamily protein (.1) Lus10032034 [exp] 133 / 8e-36 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060900 [exp] 301 / 1e-99 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 241 / 1e-76 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 231 / 7e-73 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 159 / 1e-45 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 152 / 5e-43 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 138 / 9e-38 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.012G098900 [exp] 136 / 6e-37 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.017G064201 [exp] 135 / 2e-36 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G329100 [exp] 135 / 2e-36 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.003G016725 [exp] 114 / 6e-32 AT1G80530 160 / 2e-47 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030112 pacid=23172586 polypeptide=Lus10030112 locus=Lus10030112.g ID=Lus10030112.BGIv1.0 annot-version=v1.0 ATGGGAGCTTTAAGGAATCTGATTACCGGTCTGAGTTGGCTTTGCTTCTTGCTTCTTGCTGAAGGGGAAGGGGCGGTAGTGAAGAATAAGAAGAGGAAGC CTAGAAGAGGTCAGGATTTCAGCTTTAGTGAGGCTGTAGTGAAGGCTGACTTCTGGCGTATTTTCTCTGTTTACTTTGTCGGAGTTGGATCCGGTTTGAC TGTGCTCAACAATCTCGGTCAGATTGGGATTGCTCAAGGGATGCATGACACCACCATCTTGTTGTCACTCTTTAGCTTCTGCAACTTTGCTGGCCGTCTT GGTGGTGGAGCTGTCTCTGAGCATTCGTCAGCATTAGACGGGACCCTTTACGTTGCAACTGCATTGCTGGGAGTCTGCTACAGGGTTCAGTTCTCTGTCA TGATCCCAACTGTCTCCGAGCTCTTCGGGCTGAAACACTTTGGCATCTTTTACAACTTCATATCGCTTGGAAACCCCATTGGTGCGTTCCTTTTCTCAGG TCTTCTAGCTGCACATGTTTACGACACGGAGGCAGCCAAGCAGCATGGACCGAATTCACTCTACAGTTCATCATCAGGGTTCTCCTGCTTAGGTCCAGAT TGCTTCAGGCTCGCCTTCTTGGTTCTGGCTGCTGCTTCTGGAATCGGCTCAATCGTGCGTTTCGTCAACTTTAAGGATCAAGCCAGTCTATGA
AA sequence Show only first row Show all	>Lus10030112 pacid=23172586 polypeptide=Lus10030112 locus=Lus10030112.g ID=Lus10030112.BGIv1.0 annot-version=v1.0 MGALRNLITGLSWLCFLLLAEGEGAVVKNKKRKPRRGQDFSFSEAVVKADFWRIFSVYFVGVGSGLTVLNNLGQIGIAQGMHDTTILLSLFSFCNFAGRL GGGAVSEHSSALDGTLYVATALLGVCYRVQFSVMIPTVSELFGLKHFGIFYNFISLGNPIGAFLFSGLLAAHVYDTEAAKQHGPNSLYSSSSGFSCLGPD CFRLAFLVLAAASGIGSIVRFVNFKDQASL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80530			Major facilitator superfamily ...		Lus10030112 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10002667 [exp]	8.4	0.6064
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016891 [exp]	41.1	0.5735
					Lus10024617 [exp]	60.3	0.5410
AT5G45120			Eukaryotic aspartyl protease f...		Lus10040623 [exp]	83.8	0.5146
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023293 [exp]	84.9	0.5167
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10000981 [exp]	103.5	0.5151
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	151.6	0.4907
					Lus10031954 [exp]	173.6	0.4569
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	234.0	0.4664
AT3G06240			F-box family protein (.1)		Lus10011015 [exp]	241.5	0.4627

Compare expression of checked genes

Lus10030112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.