Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010393 [exp] 100 / 2e-26 ND / Lus10019563 [exp] 91 / 2e-22 ND / Lus10020451 [exp] 76 / 4e-19 ND / Lus10042624 [exp] 73 / 1e-17 ND / Lus10009740 [exp] 71 / 2e-16 ND / Lus10008381 [exp] 64 / 9e-14 ND / Lus10008382 [exp] 64 / 9e-14 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030114 pacid=23172551 polypeptide=Lus10030114 locus=Lus10030114.g ID=Lus10030114.BGIv1.0 annot-version=v1.0 ATGGACTCGACTTCATTCCTGGATATTAACTGGAGTGGGGGTGGACCTCTCGATAGAAACTGGAACTTCGACCAAGCCTCCCACTTAGATTTATATGTTA TGGATAATTGTATGTATGGTCGTGGGTGTTTCTACTGCACTTGGGTGTTCTTGGAAGACGGGAGCCTGGTCGATGAAGGTATCATTCACATCGGAGAAAA AAGGTGCAAGCACATTGACTTGTACAAGCAGATTAAAATATGGAAGGATTCTGTTTGGACAATGAAAACCAATTCCAAGGAAGCACTGGACATCATTCGC ACTATCATATATGAGCATCCATATGGCTGTCACGGGGATGGCGTTGAGGGCGATGATGACGAAGGTCACATTTTGCGGTTGAAGGACAATGTTTGGCAGT TTGAACCTTAG
AA sequence Show only first row Show all	>Lus10030114 pacid=23172551 polypeptide=Lus10030114 locus=Lus10030114.g ID=Lus10030114.BGIv1.0 annot-version=v1.0 MDSTSFLDINWSGGGPLDRNWNFDQASHLDLYVMDNCMYGRGCFYCTWVFLEDGSLVDEGIIHIGEKRCKHIDLYKQIKIWKDSVWTMKTNSKEALDIIR TIIYEHPYGCHGDGVEGDDDEGHILRLKDNVWQFEP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030114 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	3.2	0.9035
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10012978 [exp]	4.2	0.8820
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10028594 [exp]	4.5	0.8964
AT1G06980			unknown protein		Lus10025927 [exp]	6.6	0.8701
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	7.5	0.8584
AT4G12440		APT4	adenine phosphoribosyl transfe...		Lus10032249 [exp]	11.7	0.8565
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10002296 [exp]	13.4	0.8615
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10018949 [exp]	13.5	0.8454
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	14.0	0.8077
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	14.5	0.8655

Compare expression of checked genes

Lus10030114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.