Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25620 216 / 2e-67 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT2G33700 193 / 1e-58 Protein phosphatase 2C family protein (.1) AT3G51470 190 / 1e-57 Protein phosphatase 2C family protein (.1) AT3G62260 174 / 3e-51 Protein phosphatase 2C family protein (.1.2) AT1G48040 167 / 9e-49 Protein phosphatase 2C family protein (.1) AT3G17250 158 / 6e-45 Protein phosphatase 2C family protein (.1) AT1G07160 107 / 1e-26 Protein phosphatase 2C family protein (.1) AT2G25070 104 / 2e-25 Protein phosphatase 2C family protein (.1) AT2G30020 104 / 3e-25 Protein phosphatase 2C family protein (.1) AT2G40180 101 / 3e-24 ATHPP2C5 phosphatase 2C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001682 [exp] 347 / 9e-119 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 219 / 7e-69 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 215 / 2e-67 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10030731 [exp] 195 / 3e-59 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 194 / 6e-59 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 192 / 3e-58 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10009993 [exp] 182 / 2e-54 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10012244 [exp] 182 / 9e-54 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10037832 [exp] 179 / 2e-53 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G059600 [exp] 280 / 2e-92 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 256 / 2e-83 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.018G033000 [exp] 206 / 1e-63 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G248400 [exp] 205 / 2e-63 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.005G253700 [exp] 196 / 5e-60 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 189 / 3e-57 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 189 / 4e-57 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 189 / 6e-57 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.005G102500 [exp] 186 / 7e-56 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.010G151500 [exp] 171 / 2e-50 AT1G48040 418 / 8e-146 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10030115 pacid=23172548 polypeptide=Lus10030115 locus=Lus10030115.g ID=Lus10030115.BGIv1.0 annot-version=v1.0 ATGTGTGTTCAGGATGCAGACAACGTAGTTACTCAGGAAGCACAAATCGAGAACAACGGTTTCGACGGCACCAGTGGCGGAAGCAACAGCAACAAGAAGC AAGTTCGGCAGTTGAATTGTGAGGCGGTCAGGGATACCCTGATGGAGAATTGGGATAAAGACTCTTCCTTTTTGGTACCTGATGGAGGAATCACCGTCGG AAACTCCTTTCCTCTGGAGAGCATTAGTGAGGATAGAGTCTCAGCAAATTTGGTTCCTGCCCTTCGCTGTGGAGAGTGGTCTGATATTGGTGGCCGCTCT GAAATGGAGGACACCTTTGTTTGCATCAGTGACTTGGCTAAGAAGTTTGGCAGTGCTTTCCTGACTAAGGAAGCCATCTCTTTCTACGGAATGAATATCG GGGACTGCAGGGCAGTACTGTCAAGAAACGGAATGGCAACCGAGATGTCAACTGATCACAGGCCTTGCAGCATTAGAGAAAGGTCACGAGTCGAGTCATT AGGAGGGTATGTGGATGATGGTTATCTGAACGGCCAGTTGGGGGTTACTCGTGCATTAGGTGATTGGCACCTAGAAGGGATGAAGGAGGACAAGGAGGGT AAAAGTGGGGGAGGAGGAGGTCCCTTGATTGCTGAGCCTGAACTCAAGCTGATAACATTGAGCCGGGATGATGAGTTTCTAATCATAGGTTGCGATGGGA TATGGGACGTGTTCTCGAGCCAGAATGCAGTGCATTTCGCGAGGAGGAGGCTCCAGCAACACAATGATGTGAAGCAATGCTGTAGAGAAATAGTGGAGGA AGCTATAAAGCGAGGAGCGATCGATAACTTGACAGTGGTTATGGTGAGCTTTCACATGGAGGCTCCACCTCCATCTACAGTAGTTGAGAGGGGAAGAGTG AGGAGGAGCATCTCTGCTGAGGGATTGCAGAACCTCAAATGTCTGCTTCAAGAATAA
AA sequence Show only first row Show all	>Lus10030115 pacid=23172548 polypeptide=Lus10030115 locus=Lus10030115.g ID=Lus10030115.BGIv1.0 annot-version=v1.0 MCVQDADNVVTQEAQIENNGFDGTSGGSNSNKKQVRQLNCEAVRDTLMENWDKDSSFLVPDGGITVGNSFPLESISEDRVSANLVPALRCGEWSDIGGRS EMEDTFVCISDLAKKFGSAFLTKEAISFYGMNIGDCRAVLSRNGMATEMSTDHRPCSIRERSRVESLGGYVDDGYLNGQLGVTRALGDWHLEGMKEDKEG KSGGGGGPLIAEPELKLITLSRDDEFLIIGCDGIWDVFSSQNAVHFARRRLQQHNDVKQCCREIVEEAIKRGAIDNLTVVMVSFHMEAPPPSTVVERGRV RRSISAEGLQNLKCLLQE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10030115 [exp]	0	1
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	1.7	0.9243
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10035933 [exp]	3.7	0.8784
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	4.0	0.9149
AT5G19860			Protein of unknown function, D...		Lus10013752 [exp]	4.4	0.8686
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	5.2	0.9097
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10020346 [exp]	5.7	0.8879
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	6.9	0.9042
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	9.2	0.8820
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	9.5	0.8912
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	10.0	0.8860

Compare expression of checked genes

Lus10030115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.