Plant FIBer expression Database

Lus10030116 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040028
[exp]
123 / 6e-33 ND /
Lus10016291
[exp]
69 / 2e-14 ND /
Lus10042981
[exp]
70 / 3e-14 ND /
Lus10021195
[exp]
64 / 7e-12 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10030116 pacid=23172544 polypeptide=Lus10030116 locus=Lus10030116.g ID=Lus10030116.BGIv1.0 annot-version=v1.0
ATGTCCTTCCCAGTCCGTGAACAATATCCTCCGGGCGTTCCGTCGGTGGACCGCCCTCCGAATCATGGAGAGGTCCTGGGTGCTACTCTGCCTACTATGC
ATGATGTGGAGATGAGTCCGGCTGCACACACACCTCCGATCGCTGCTACTACTCCCTCTAAATCTTACACGAATCTTTTTTCTACAGCCGGAAACTCGCA
ATCCTCTGTTGTTCAGCGTTCTAACCCGGGCGATATTCAATTTGCTGTCAGGAATGGGGCTCGGTTACGAGCAACTAAAAAGTCCATTGAAGACAACATA
GTTAAAAACATATTGTGGTTTGAGGAAATGCTTTCTACCGAGGAAGAGATGACGAAGAGAATGAATGTTATAGAGGAGATGATTTCAAGGATGGATCCCG
TCAACATCCCCCTTGACGAGGATGACGTGCTCGACGATGATAAGGAAATTCAAGACGTACTCACTATTACAAGACACATGACGGTCATAGAGGAAGAAGA
TGAACCCATTGTTGAAGAATATGTAGCCGACCATGATGAAAACTTAGAAGAACATGAATGGGACGGGAGTGAATTCCCTTTCCAATTATTAGATGAAGAA
GATGAAGATCTAGAAGATACACCAATCATTAGAGAAGTTCACGTTGTATGTGATGGTGAACTTGGAAAATGCGAATGGGATGGGTCTTCCTCAAGCTTTT
GGGATGACGATGAAGATATGCGGGAACAACTCATTGAGGAAACTCAAACTGTTTGCAATGAAGAACAAGAAGAATACAAAGAAGATGACAATGAATATCT
CATCCAAACATTGTGGGAGGATAAAGCTCATATTTCAACTTTGGTGACAGAAGATATAAAGTGCTTCATCTACAAGGACATCTCAGAAATTATGATTCCA
CCAAAGGACATGGAGACTCTTCAAACTATTGTCCAGTCATGA
AA sequence
>Lus10030116 pacid=23172544 polypeptide=Lus10030116 locus=Lus10030116.g ID=Lus10030116.BGIv1.0 annot-version=v1.0
MSFPVREQYPPGVPSVDRPPNHGEVLGATLPTMHDVEMSPAAHTPPIAATTPSKSYTNLFSTAGNSQSSVVQRSNPGDIQFAVRNGARLRATKKSIEDNI
VKNILWFEEMLSTEEEMTKRMNVIEEMISRMDPVNIPLDEDDVLDDDKEIQDVLTITRHMTVIEEEDEPIVEEYVADHDENLEEHEWDGSEFPFQLLDEE
DEDLEDTPIIREVHVVCDGELGKCEWDGSSSSFWDDDEDMREQLIEETQTVCNEEQEEYKEDDNEYLIQTLWEDKAHISTLVTEDIKCFIYKDISEIMIP
PKDMETLQTIVQS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10030116
[exp]
0 1
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Lus10029182
[exp]
3.2 0.7972
AT3G25180 CYP82G1 cytochrome P450, family 82, su... Lus10016287
[exp]
4.1 0.8262
Lus10024617
[exp]
4.9 0.7542
AT4G12080 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localize... Lus10000381
[exp]
9.4 0.7433
AT1G22590 MADS AGL87 AGAMOUS-like 87 (.1.2) Lus10023293
[exp]
10.0 0.7335
AT5G61000 ATRPA70D Replication factor-A protein 1... Lus10003025
[exp]
10.1 0.7934
AT5G54160 ATOMT1 O-methyltransferase 1 (.1) Lus10002667
[exp]
10.4 0.7362
AT4G12080 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localize... Lus10000177
[exp]
11.6 0.6503
AT4G29035 Plant self-incompatibility pro... Lus10011895
[exp]
13.9 0.7659
Lus10036275
[exp]
14.1 0.7604

Lus10030116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.