Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45290 158 / 6e-42 RING/U-box superfamily protein (.1.2) AT4G09560 77 / 7e-15 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 72 / 4e-13 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G72200 71 / 4e-13 RING/U-box superfamily protein (.1) AT2G17730 69 / 8e-13 NIP2 NEP-interacting protein 2 (.1.2) AT1G22500 70 / 1e-12 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT4G35840 68 / 1e-12 RING/U-box superfamily protein (.1) AT1G71980 70 / 2e-12 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G72310 69 / 2e-12 ATL3 RING/U-box superfamily protein (.1) AT3G19950 68 / 4e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001683 [exp] 903 / 0 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2) Lus10035680 [exp] 133 / 3e-33 AT5G45290 343 / 1e-111 RING/U-box superfamily protein (.1.2) Lus10013618 [exp] 84 / 1e-17 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10043426 [exp] 69 / 4e-13 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 69 / 5e-13 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10037264 [exp] 71 / 8e-13 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10001568 [exp] 69 / 9e-13 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10028443 [exp] 69 / 1e-12 AT5G66160 286 / 6e-96 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10000333 [exp] 69 / 2e-12 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190500 [exp] 462 / 4e-158 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.018G114700 [exp] 437 / 1e-147 AT5G45290 131 / 2e-32 RING/U-box superfamily protein (.1.2) Potri.002G140500 [exp] 273 / 2e-85 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2) Potri.014G053500 [exp] 271 / 1e-84 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.001G127100 [exp] 165 / 3e-44 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 158 / 1e-41 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.019G010500 [exp] 72 / 3e-14 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 71 / 6e-14 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 73 / 1e-13 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.010G235200 [exp] 71 / 1e-13 AT1G20823 80 / 3e-18 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10030117 pacid=23172539 polypeptide=Lus10030117 locus=Lus10030117.g ID=Lus10030117.BGIv1.0 annot-version=v1.0 ATGGGTTCCGGCAGCAGTCGTCCGCGGTCAAACCCATCTGGGTCCCGATCAAACCGTCCGATCAACCGTTCTCCGTCCAGGATGTTTTCCTCCATGATTT GCGGTGGCTCTTCCTCTTCCTCTTCTTCTCGTGCCTCGGCTGAGATGGAAGATCGTCCTTATGAAATGTTGATGAGTTCTGTACAACATTCTGATCCACT GAGAAGCAAATTTGAAATCCCAATACATGAATCCTCTACCAATATTGGTGCAGAGGTAGCGTCTGCAAATTCTGATGGTGTGATTGGTCACTCGTCCACA GCAAGAATTGCATCCAACAAGAGAAGAGTTGGTGACACTGGTTTGGGTCACACTGGAACAAGTAATCAGGAGAGACGTTTCTCTGAAAGTTTGGAGTTTG TCTCTTCTCGGGTAAGTGATGAATATAGCTTCAACGATTCTTTTAGGAATAGGTATAGTGGTGAAGCTAGTAGTTCATGTAGACAACAACAATCTTCAAA TCGCCCCTCTTTAAATGATTCGGCTAACAAGGATTCAGTCAATGGTATGGAAAATCCAGACAATTGCGATGTTCGTCAGGCGGTTGTATATGCAGAAAGT TCACCTCAAGGGCTGCAAGCATCAACTTTTGAAAGGGTTTCTGTTAACAATTGCATGGATGAAATGTCACCTTGGTCTCTGCATGATTCTGATGGTAGCC ATAGTGTTGAAGTTCGACCTGTATCGAGCTCACTAGGAGATGAAACTTTGCAAGAAGCAGGTCCCGAGGGTTTAGGACTTGTTGTAAGTGAACATGTGCA GGATGATGGTGATGTGCTTCATGTAGATGTTGTAAGCATTTCCTCCAGCATCTTTTCTACAAACAATGCTGAAACAACTAGTTATGAAGCTAGACGAAAC AGTAGAAGACTTTTCTGGGATGCATTTTCCAGACGCAGTTCCTGGAGGCCTATTGATCCACCACCTGTTGCTTTATCGACAGAGAGTAGTGACGATTTGG CATCTCATGATAGATGGCTCCTTGATTTTAGTGGTGACTTCCACAATGATGGTGTTAGTAGCGATGCTGGATATCTTGGAAGCAGGATCCGTAGCTGGAA TGACCGGAGGCGTCACTCAAGATCAGAGATTTGGGAAAGGCTTGTAGGAAGCCTTGATGAGAACGAGCGAAGAACAACCTTATGTCCTTCTGGACTTCAC CCTGACGGTACTTGTTCTTGTGAATCACTCTTGACGAGCGGCGAGTCTAGTACTCGTGCAAGTATATCACGGATAGTCATGCTTGCTGAAGCTCTTTTTG AGGTGTTGGATGAAATTCATCGGCAGCCTTCTTCACTTTCCCTATCAATGGTTGCGCTCCCAGCCCCGGAATCTGTGGTCGACTCTTTTCCTCTTAAGAA TCACAAAAAGGACGACAATATTGAAGTTGGCGATGAAGTTGATCAGTGCTACATCTGTCTGTCCGAGTACGAAGAAGGGGATAAAATAAGAGTACTTCCT TGCCACCATGAGTATCACATGTCATGTGTTGATAAATGGCTTAAAGAGATACACGGTGTCTGCCCACTTTGTCGGGGAGATGTTCGCCAGGGCGCCACTG AGTCATCATCTACTCGCACCTCCGAGATTCCTTCATTCTGA
AA sequence Show only first row Show all	>Lus10030117 pacid=23172539 polypeptide=Lus10030117 locus=Lus10030117.g ID=Lus10030117.BGIv1.0 annot-version=v1.0 MGSGSSRPRSNPSGSRSNRPINRSPSRMFSSMICGGSSSSSSSRASAEMEDRPYEMLMSSVQHSDPLRSKFEIPIHESSTNIGAEVASANSDGVIGHSST ARIASNKRRVGDTGLGHTGTSNQERRFSESLEFVSSRVSDEYSFNDSFRNRYSGEASSSCRQQQSSNRPSLNDSANKDSVNGMENPDNCDVRQAVVYAES SPQGLQASTFERVSVNNCMDEMSPWSLHDSDGSHSVEVRPVSSSLGDETLQEAGPEGLGLVVSEHVQDDGDVLHVDVVSISSSIFSTNNAETTSYEARRN SRRLFWDAFSRRSSWRPIDPPPVALSTESSDDLASHDRWLLDFSGDFHNDGVSSDAGYLGSRIRSWNDRRRHSRSEIWERLVGSLDENERRTTLCPSGLH PDGTCSCESLLTSGESSTRASISRIVMLAEALFEVLDEIHRQPSSLSLSMVALPAPESVVDSFPLKNHKKDDNIEVGDEVDQCYICLSEYEEGDKIRVLP CHHEYHMSCVDKWLKEIHGVCPLCRGDVRQGATESSSTRTSEIPSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45290			RING/U-box superfamily protein...		Lus10030117 [exp]	0	1
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	20.6	0.7352
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10001192 [exp]	23.0	0.7107
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	27.0	0.7198
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10001596 [exp]	30.9	0.6932
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Lus10011396 [exp]	31.5	0.6929
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10029990 [exp]	36.9	0.7140
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002346 [exp]	38.9	0.6770
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10024482 [exp]	41.0	0.6938
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	47.6	0.6791
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015156 [exp]	49.2	0.7032

Compare expression of checked genes

Lus10030117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.