Gene [FLAX] | FIBexDB

Lus10030119 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10042895 [exp]	69 / 7e-14	AT4G01710	224 / 9e-76	CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1)
Lus10005217 [exp]	61 / 1e-10	AT3G20660	221 / 2e-76	organic cation/carnitine transporter4 (.1)
Lus10036397 [exp]	58 / 1e-10	ND	/
Lus10035493 [exp]	58 / 3e-09	AT4G11450	462 / 2e-151	Protein of unknown function (DUF3527) (.1)
Lus10001304 [exp]	57 / 3e-09	AT5G08020	40 / 0.006	ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10030065 [exp]	56 / 6e-09	ND	/
Lus10037707 [exp]	54 / 5e-08	AT3G16780	343 / 8e-118	Ribosomal protein L19e family protein (.1)
Lus10038558 [exp]	49 / 2e-07	ND	/
Lus10010518 [exp]	49 / 4e-07	ND	/

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10030119 pacid=23172614 polypeptide=Lus10030119 locus=Lus10030119.g ID=Lus10030119.BGIv1.0 annot-version=v1.0

ATGGTTGATTCCATTATTTCCCCTTCTCTGCTTCCCTTTCCCTTCTCTTCCGCTATTCCCCTTGCTGCTAAATCATGGACGGATCTTTTCTCTGATGGTT

CCGACCTCTCGCTTTCTTATGTCAAGCCTACTTTGATTGATGGTGTTCTCCCAATCTCTAAATTGGTGCTTGAGAAAGGTCTTCCTAGGATACAACACTG

CTTAGTCGCACAGTTCCTTGGCCCGATCCCACCGATCAGGGTTTTTCAAGCTATGGCGTCTCGGTTGTGGGAACGTGATGGATTCGTTCGAGTGACGCAG

ACATCCACTCGATTGTTCTTGATTCAATTTCCCTTTGCGGAGACTTTCTCGATTGATGGTTTGGGGTATGCGAAAACTTGTGTGTTGATGACAAAGACGG

TTGTGTGCGCTCATTTAGTTCCTATTGCTCTTGATGGTGGTGAAACAATTCACAGTGCGATTGAGTATATATCCTTCTGTGAGTATAAGTTGCCTGCTCA

TAAAGAGGCCTCAGTGAAGGTTCAGACAAAGGCTTGGCATCCAAAAGTCCCTCAGGTTCCAGTGGTTCCAGACGAGTTATCCAAACTCTCTAGTGAGAGG

GAGGTGAGTCCTGTGCAACTAATGATTCTTGTTGAGCCTTTGCTTAAGGATTTTCCTACGGCTTCTTTGGAAGCTACGTGCTCCCCTTCCCTGGTGTGTT

CTATTGATGAGGATTGGGATGATGTTCTTGTTGATTGCCATGAAATTCCTGTGCTTTTTTGGTATTGTTAA

AA sequence

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>Lus10030119 pacid=23172614 polypeptide=Lus10030119 locus=Lus10030119.g ID=Lus10030119.BGIv1.0 annot-version=v1.0

MVDSIISPSLLPFPFSSAIPLAAKSWTDLFSDGSDLSLSYVKPTLIDGVLPISKLVLEKGLPRIQHCLVAQFLGPIPPIRVFQAMASRLWERDGFVRVTQ

TSTRLFLIQFPFAETFSIDGLGYAKTCVLMTKTVVCAHLVPIALDGGETIHSAIEYISFCEYKLPAHKEASVKVQTKAWHPKVPQVPVVPDELSKLSSER

EVSPVQLMILVEPLLKDFPTASLEATCSPSLVCSIDEDWDDVLVDCHEIPVLFWYC

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030119 [exp]	0	1

Lus10030119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.