Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15580 134 / 2e-39 RING/U-box superfamily protein (.1.2) AT3G58720 66 / 8e-13 RING/U-box superfamily protein (.1.2) AT1G49850 63 / 6e-12 RING/U-box superfamily protein (.1) AT3G13430 61 / 6e-11 RING/U-box superfamily protein (.1.2.3) AT1G55530 60 / 9e-11 RING/U-box superfamily protein (.1) AT5G56340 59 / 2e-10 ATCRT1 RING/U-box superfamily protein (.1) AT2G40830 57 / 1e-09 RHC1A RING-H2 finger C1A (.1.2.3) AT4G26400 57 / 1e-09 RING/U-box superfamily protein (.1.2) AT1G04790 57 / 1e-09 RING/U-box superfamily protein (.1) AT2G29840 56 / 3e-09 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001685 [exp] 338 / 1e-119 AT2G15580 131 / 2e-38 RING/U-box superfamily protein (.1.2) Lus10001688 [exp] 81 / 1e-19 AT2G15580 76 / 2e-18 RING/U-box superfamily protein (.1.2) Lus10025612 [exp] 62 / 3e-11 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 61 / 4e-11 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10013397 [exp] 58 / 6e-10 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10002113 [exp] 57 / 2e-09 AT1G49850 133 / 2e-37 RING/U-box superfamily protein (.1) Lus10002369 [exp] 55 / 3e-09 AT3G47990 252 / 1e-83 SUGAR-INSENSITIVE 3 (.1) Lus10001582 [exp] 55 / 3e-09 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10023671 [exp] 56 / 6e-09 AT1G04790 232 / 7e-67 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G114500 [exp] 182 / 2e-58 AT2G15580 161 / 3e-50 RING/U-box superfamily protein (.1.2) Potri.006G190300 [exp] 181 / 6e-58 AT2G15580 170 / 2e-53 RING/U-box superfamily protein (.1.2) Potri.014G139400 [exp] 61 / 3e-11 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.009G091200 [exp] 61 / 6e-11 AT1G49850 108 / 3e-28 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 59 / 3e-10 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 59 / 3e-10 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.009G034700 [exp] 56 / 3e-09 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.001G297000 [exp] 56 / 3e-09 AT1G49850 107 / 2e-27 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 56 / 3e-09 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.003G176500 [exp] 56 / 4e-09 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10030120 pacid=23172558 polypeptide=Lus10030120 locus=Lus10030120.g ID=Lus10030120.BGIv1.0 annot-version=v1.0 ATGGCGGGAATATTGCCCGGCGTGGAATGTGCCCGGAGGAGAAGGTTACATCAAGGCGGCGGCGCCAATTCCTCCGACAACGGTGGCGGAGGAAGGAGGC CCACCTTATGTTTGTACACAAGCAACCACGATAATGGCAGCTCACATAGTTCAATGCCCACCACCACTACTTTGCAAAGAAGCACACAGAATCAGAATCT GGGAGGAGTGGCCAGACAAGCCAAGGAAAGACTGGATGAGAAACTTAGATTACAAAGGAATTTGTTTGTTTCCAAATCCAAACGACAAGACACGAGTTCG GGGACATTGAGGATAGTGGATGCCAGAACAATGGAACCGTTGGGAGAATTACAGACAGAAGTGTTGAAAGCAAAATCGTGGAAGTGGGGGATGATGAAAT TGAGATGGAAGACTGCTAATAGTAGTGGTAATGGTGAGCAAGAAGAGTGCCCTATTTGCATAGATGGTTTCAAGGTTGAGGAGCAAGTGGTTCACCTTCC ATGTGTCCACAAGTTCCATACCAAGTGCTTGCTTCCTTGGCTCCTCACCAATGCTCATTGCCCTTGTTGCAGAATGGTAATTCACATTGAAATCCCATCT TCTTCATAG
AA sequence Show only first row Show all	>Lus10030120 pacid=23172558 polypeptide=Lus10030120 locus=Lus10030120.g ID=Lus10030120.BGIv1.0 annot-version=v1.0 MAGILPGVECARRRRLHQGGGANSSDNGGGGRRPTLCLYTSNHDNGSSHSSMPTTTTLQRSTQNQNLGGVARQAKERLDEKLRLQRNLFVSKSKRQDTSS GTLRIVDARTMEPLGELQTEVLKAKSWKWGMMKLRWKTANSSGNGEQEECPICIDGFKVEEQVVHLPCVHKFHTKCLLPWLLTNAHCPCCRMVIHIEIPS SS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013924 [exp]	2.4	0.9656
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	3.3	0.9672
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10003717 [exp]	6.9	0.9550
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	8.7	0.9512
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	12.5	0.9473
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036782 [exp]	13.0	0.9303
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	13.8	0.9182
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10040881 [exp]	15.4	0.9466
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10017049 [exp]	18.0	0.9317
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10012489 [exp]	23.2	0.9555

Compare expression of checked genes

Lus10030120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.