Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15130 615 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 370 / 8e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 369 / 1e-118 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 360 / 9e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 355 / 3e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 361 / 8e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 354 / 4e-113 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 355 / 7e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 354 / 9e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 338 / 4e-108 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007683 [exp] 535 / 0 AT3G15130 322 / 1e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 379 / 1e-124 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027534 [exp] 365 / 9e-121 AT3G20730 474 / 2e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 373 / 6e-120 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 368 / 6e-119 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 366 / 1e-118 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 364 / 1e-117 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 358 / 1e-115 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 357 / 6e-115 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G244500 [exp] 727 / 0 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 385 / 1e-126 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 388 / 5e-126 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068900 [exp] 375 / 2e-124 AT3G20730 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 377 / 2e-123 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 369 / 2e-118 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 367 / 2e-117 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 360 / 9e-116 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 358 / 2e-115 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 357 / 8e-115 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030124 pacid=23172534 polypeptide=Lus10030124 locus=Lus10030124.g ID=Lus10030124.BGIv1.0 annot-version=v1.0 ATGCCTGAAAAGAACTTGGTTGCTTGGACGTCTCGAATGTGTGGGTACGTACAAAATGGATACTCGGAAGAGTCGTTATCTCTATTCTCCCAGTTGGTAT CAACTGGGCTTAACCCAAATGATTTCACTCTTTCCACAAATCTTAAAGCTTGCGGAATGCTGAGTGTTCCTGGGATCGGTATGCAACTTCATGACATCTG TGTAAAAACTGCATACGATTTGCAGACTGTGGTAGCCAACACTATCCTTGATATGTATTCCAAATGTGGAAGAATCGTTGAAGCAGCCAGTGTGTTTGCA GCAATGCCGGGCAAAAACCTGGTCAGTTGGAATGCGATGATAGCAGCGTACAATCTTACAGGGAAGGGTAAGAAAGCTCTGCGTGTGTTCAGGAAAATGA GAGAAGATGGACAAGTTCCAGATGAGTTTACACTTACAAGTGCCTTGAAGGCCTGTACCAAGCTCGGTGCTGCTAGAGAAGCAGCGCAGATTCATGCATC ATTGGTCACAGATGGCTTTCATTATTCCGACAAGGCTATTGTTGCTGGTTCCTTGATCGATTCGTATGTGAAATGTGGGGAGCTGTTGCAAGCTCGACGA GTATTTGATCAGATTGAGAAGAAACATATAATATCGTGGAGTGCACTGATTCTCGGCTATGCTCAAGAAGAAAAGTTAGAAGAAGCCATGGAACTGTTTA AGCTGCTAAGAGTTAGTACAATTGACGTTGACGAATATGTGCTGTCAAGTATGATGGCCATCTTTGCAGATTTTGCCCTGGTGGAGCAAGGCAGACAAGC TCATGGTTTCAGCCTTAAGATCCCCTCTGGTTTGCGGACTTCGGTATGTAATTCAGCTCTAGATATGTATCTCAAATGTGGGATGATTGAAGATGCTGAG AAACTGTTTGGTGCAATGTCAGCGAGAGACGTGGTTTCCTGGACTGTAATGATCACTGGCTACGGAAAGCATGGTCTTGGGAAAGAGGCTGTTCATCTCT TCAACAGAATGCTGTCGCAAAACATTAAGCCTGATGATGTTACCTACTTGGCCGTTCTCTTGGCCTGCAACCATTCAGGGCTGATGGAAGAAGGTGAAGA GTACTTATCCAAGTTATGCAGCTTTGAGGGGATCAAACCTAGAGTTGAGCATTATGCCTGCATGGTTGATCTCCTGGGCCGTGCGGGAAGATTAAAAGAA GCTAAGAGTCTAATCTGCACGATGCCCTTGGAACCAAATGCAGGCATATGGCAAACATTGCTTAGCGCGTGTCGTGTACATGGAGATATTGACATGGGAA GAGAGGTTGGTAACATCATTCTCAGAATGGATGGAAATAACCCAGTAAACTATGTGATGCTGTCAAATATGTACGCCAATGCTGGCTACTGGGAAGAATC CCAAACGCTAAGAGAAACGGTGACATCAAAGAAACTGAAGAAAGAAGCCGGGAGGAGCTGGGTTGAGATTGACAAGGAAATACATTTATTCTATGGTGGA GATGCAAACATCCTCTAG
AA sequence Show only first row Show all	>Lus10030124 pacid=23172534 polypeptide=Lus10030124 locus=Lus10030124.g ID=Lus10030124.BGIv1.0 annot-version=v1.0 MPEKNLVAWTSRMCGYVQNGYSEESLSLFSQLVSTGLNPNDFTLSTNLKACGMLSVPGIGMQLHDICVKTAYDLQTVVANTILDMYSKCGRIVEAASVFA AMPGKNLVSWNAMIAAYNLTGKGKKALRVFRKMREDGQVPDEFTLTSALKACTKLGAAREAAQIHASLVTDGFHYSDKAIVAGSLIDSYVKCGELLQARR VFDQIEKKHIISWSALILGYAQEEKLEEAMELFKLLRVSTIDVDEYVLSSMMAIFADFALVEQGRQAHGFSLKIPSGLRTSVCNSALDMYLKCGMIEDAE KLFGAMSARDVVSWTVMITGYGKHGLGKEAVHLFNRMLSQNIKPDDVTYLAVLLACNHSGLMEEGEEYLSKLCSFEGIKPRVEHYACMVDLLGRAGRLKE AKSLICTMPLEPNAGIWQTLLSACRVHGDIDMGREVGNIILRMDGNNPVNYVMLSNMYANAGYWEESQTLRETVTSKKLKKEAGRSWVEIDKEIHLFYGG DANIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10030124 [exp]	0	1
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	3.9	0.8046
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	5.5	0.8298
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	9.2	0.8526
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	10.5	0.8313
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10021081 [exp]	14.3	0.8093
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10004892 [exp]	18.0	0.7635
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	19.3	0.8022
AT5G24510			60S acidic ribosomal protein f...		Lus10034864 [exp]	21.6	0.7398
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	25.6	0.7824
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10000204 [exp]	28.0	0.7426

Compare expression of checked genes

Lus10030124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.