Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20540 617 / 0 MEF21 mitochondrial editing factor 21 (.1) AT5G56310 388 / 4e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 372 / 4e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 369 / 2e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 367 / 1e-120 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05750 360 / 8e-120 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59200 358 / 3e-118 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 363 / 7e-118 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42920 357 / 7e-118 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G15930 360 / 3e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022124 [exp] 550 / 0 AT2G20540 345 / 1e-116 mitochondrial editing factor 21 (.1) Lus10005987 [exp] 380 / 2e-127 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 371 / 3e-122 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007341 [exp] 359 / 9e-119 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 363 / 3e-118 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 359 / 6e-117 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 356 / 7e-116 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027311 [exp] 350 / 3e-115 AT1G33350 621 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 353 / 4e-115 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035900 [exp] 731 / 0 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.017G141200 [exp] 383 / 4e-128 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 382 / 1e-126 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 378 / 1e-126 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G223900 [exp] 377 / 9e-126 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G217600 [exp] 376 / 1e-125 AT1G05750 548 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 375 / 7e-125 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 375 / 2e-123 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G089400 [exp] 370 / 2e-123 AT1G33350 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 372 / 4e-122 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030125 pacid=23172574 polypeptide=Lus10030125 locus=Lus10030125.g ID=Lus10030125.BGIv1.0 annot-version=v1.0 ATGGTGGACGCATGCAATGCCGCGCAGGATTTGGAATACGCCACTCTGCTCTTCAAGCAAGTCAGTGAACCAAATGGGTTCTTATACAATGCGATGATAC GGACTTACACGCGCAATTCTTCGTATGGTCTAACCATAACTATCTATAGGCGAATGTTGGAGATGATAAAAAGATCAGAACTCAACAACCCCATCTCGCC TGACAAATTCACATTCCCATTTGTCGTAAAAGCTTGCACGGGTCTGGCGAGCCATCAATTGGGCAGGCAAGTTCACGCCCATCTACTCAAGTTCGGACCG CAGTCGCATGTGCTTACAGAGAACGCGCTGATTGACATGTACGCCAAATGCGATAATTTATCAGATTCACACAAGGTGTTCGACGAAATGACGGAAAGAA ATGCAATTAGCTGGAACAGTGTTATCTCTGGCCACGCTAGGTTGGGTCAAATGAGAAAGGCAAGGATTTTGTTCGACAAAATGCCTGAAAGGACGATAGT CTCATGGACTGCAATTGTAACGGGCTACAGTCGAATGGGGTTTTATGATGACGCTCTGGAGTTGTTTGGGCAGATGCAAATGGCTGGGTATGAGCCTGAC GAGATCAGTATTGTCTCTGTTTTGCCCGCCTGTACAAACCTAGTAGCTCTTGAAATTGGTAGATGGATACATATGTACTGTGATAAAAATGGGTTGTTGA GGAAAACCAACATCTGCAATGCACTGATGGAGATGTATGCAAAATGCGGCTGCATTGATCAAGGCCGCCAGTTGTTCGATCAAATGCGCAAAAGGGATGT TATATCTTGGAGCACCATGATTGGAGGCCTGGCAAATCACGGCAAGGCCCTTGAAGCTATCAACATGTTCGAGAGGATGAAGCTCCAAGGGATTGAGCCG AATGGAATTACGTTTCTGGGTCTTCTATCTGCTTGTGCTCACGTTGGTTTATGGCAGCAAGGTGTGAGGTCCTTCGACTATATGCGAGATGAGTGCCTCA TAGAGCCTGTAATTGAGCACTTTGGAGTTCTGGTTGATCTTCTTGGACGAGCAGGGCAGCTCAGCCATGCTCTTAACGTTATAGAACAGATGCCAATGAG ACCTGATTCGAAGATTTGGGGTTCGCTGTTGAGTTCTTGCAGGGCTCATGGGAATCTGGATATCGCTGTGGTTGCAATGAAGCACCTTGAAGAGCTGGAA CCAGAAGACACGGGGAATTATGTTCTGCTTTCGAATATATATGCTGACCTGGGTAAGTGGGAGGGTGTTTCAAGAATGAGGACACTAATACGAAGCAAGA GCATGAAGAAAACTCCAGGGTGTAGCTCGATCGAAATCGACAATGTAGCTACTGAGTTCTCTTCTGGCGATGATTCGAAGCCCTTCTCAAGACAGATCTT CAAGTTGCTAGAGATGCTGACTTCTTGTGAGGAGATAAGTGATCATATACTTGACATCATCCCAGAGGATGCAGGCAGCTGA
AA sequence Show only first row Show all	>Lus10030125 pacid=23172574 polypeptide=Lus10030125 locus=Lus10030125.g ID=Lus10030125.BGIv1.0 annot-version=v1.0 MVDACNAAQDLEYATLLFKQVSEPNGFLYNAMIRTYTRNSSYGLTITIYRRMLEMIKRSELNNPISPDKFTFPFVVKACTGLASHQLGRQVHAHLLKFGP QSHVLTENALIDMYAKCDNLSDSHKVFDEMTERNAISWNSVISGHARLGQMRKARILFDKMPERTIVSWTAIVTGYSRMGFYDDALELFGQMQMAGYEPD EISIVSVLPACTNLVALEIGRWIHMYCDKNGLLRKTNICNALMEMYAKCGCIDQGRQLFDQMRKRDVISWSTMIGGLANHGKALEAINMFERMKLQGIEP NGITFLGLLSACAHVGLWQQGVRSFDYMRDECLIEPVIEHFGVLVDLLGRAGQLSHALNVIEQMPMRPDSKIWGSLLSSCRAHGNLDIAVVAMKHLEELE PEDTGNYVLLSNIYADLGKWEGVSRMRTLIRSKSMKKTPGCSSIEIDNVATEFSSGDDSKPFSRQIFKLLEMLTSCEEISDHILDIIPEDAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10030125 [exp]	0	1
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10025014 [exp]	7.4	0.6996
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	7.5	0.7214
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	11.7	0.6961
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	12.6	0.7061
AT3G24030			hydroxyethylthiazole kinase fa...		Lus10023688 [exp]	14.0	0.6943
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10028945 [exp]	27.4	0.6811
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10012156 [exp]	37.9	0.6765
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10031620 [exp]	48.5	0.6788
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	48.5	0.6556
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10019206 [exp]	49.2	0.6832

Compare expression of checked genes

Lus10030125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.