Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007686 [exp] 201 / 8e-65 AT1G52343 102 / 2e-25 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030127 pacid=23172589 polypeptide=Lus10030127 locus=Lus10030127.g ID=Lus10030127.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAGAAAAATCTTAGAACGAGGCGCCGACCGATTAGCTATCATCACCGGCGGGATCCACTCTCTTCCTGCTCAATCCTCCGGTGCGATGGAA AGTCCTCTGCTGGCTCGTCGAATTTACGTCCTGACTTTAACGAGATTCATACTGTCACTGCTGTTGAAGCAGCACCTAAGCAGTCGAATTCTCTTCCGAA GCAAGTTGAAGAATCGATGCTGCCGCTCCACGAACCTACTGGTTTGGTTAATGTTCTGAATGGAACTTCTGGTTCTACCCTGCCGGACGAAGCAGCAGCA GCAGCTGCCACTGGTACCTCCACCGGTCATTTTGTTAGCAATTTGGATGAAATTAGAGAAATGGTGCAGCAATCGGGATCTGTCCAATCAGTTCACAGTC CGGAAGCCATTGAATCAAGTTCGGGCACAGAGCAACTTGTTCGAGGACAGATTCGTTCCACCATTACAGCATCAGAAAGGACCAGGGTTATCTGTTCTGT GGCTATTAGTGGCCTCATCATATCTAGGGTTCCCTCTTCTAGGGGACAGTATAGTGAAGGGAATTCTGAGCTTTAG
AA sequence Show only first row Show all	>Lus10030127 pacid=23172589 polypeptide=Lus10030127 locus=Lus10030127.g ID=Lus10030127.BGIv1.0 annot-version=v1.0 MEEEKNLRTRRRPISYHHRRDPLSSCSILRCDGKSSAGSSNLRPDFNEIHTVTAVEAAPKQSNSLPKQVEESMLPLHEPTGLVNVLNGTSGSTLPDEAAA AAATGTSTGHFVSNLDEIREMVQQSGSVQSVHSPEAIESSSGTEQLVRGQIRSTITASERTRVICSVAISGLIISRVPSSRGQYSEGNSEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030127 [exp]	0	1
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	6.3	0.7615
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10015065 [exp]	7.9	0.7224
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10027422 [exp]	13.6	0.7419
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10034671 [exp]	15.5	0.7338
AT1G27170			transmembrane receptors;ATP bi...		Lus10011241 [exp]	29.7	0.6823
AT5G36930			Disease resistance protein (TI...		Lus10011240 [exp]	30.0	0.6946
AT5G35740			Carbohydrate-binding X8 domain...		Lus10038801 [exp]	32.7	0.7324
					Lus10032581 [exp]	40.3	0.7134
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005092 [exp]	42.7	0.7192
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	44.5	0.7096

Compare expression of checked genes

Lus10030127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.