Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67623 70 / 3e-14 F-box family protein (.1) AT2G35280 68 / 3e-14 F-box family protein (.1) AT1G74875 62 / 9e-12 unknown protein AT3G30430 42 / 4e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037978 [exp] 258 / 2e-87 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10038709 [exp] 254 / 8e-86 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10022147 [exp] 193 / 2e-63 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10038720 [exp] 189 / 1e-61 ND 41 / 8e-05 Lus10005844 [exp] 183 / 2e-59 AT1G67623 76 / 3e-17 F-box family protein (.1) Lus10023768 [exp] 149 / 2e-46 AT1G74875 66 / 6e-14 unknown protein Lus10006434 [exp] 71 / 2e-14 AT1G67623 61 / 1e-10 F-box family protein (.1) Lus10030790 [exp] 58 / 5e-10 AT1G67623 57 / 4e-09 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008800 [exp] 145 / 3e-43 AT1G74875 110 / 2e-29 unknown protein Potri.001G321400 [exp] 134 / 4e-39 AT1G67623 102 / 6e-26 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030128 pacid=23172580 polypeptide=Lus10030128 locus=Lus10030128.g ID=Lus10030128.BGIv1.0 annot-version=v1.0 ATGCACACGCCATCAATTTCTTCTCTCCGCCATCCCCCTAGAGACATCCTCGTTGACGTCCTCGCTAGGGTAGCCGTCACATCCGCCGTCGACCTCGTCA GCCCAAAATTGACATGCAAGGCCCTGTTAGACGGTTTCGTAGACGACTACGTATACCACCACAACGACATCTCCAAAATCCCCCTCATGCCTTGGAAGAT CAACCACCAATTTGTCTTCGATCGATGCGTAACCAGCAAAAACCCTGAGGCTCTGTTTCGCCAAGGCATGGTCGAGTTCTTCGGTTCCCTTGAAATTCAG TCAGACCTTGCCAATTTAATGTCGGCAGCCCGGTTGGGTCACCTGGAATCGATTTACATTTGCGACATCGTCGCGTTGTGCCTTGGCAAGGAGGAAGAAG GGATGACTTTGCCTCAGTCTACAAAAGGAGGTGGATTACGGTGGTCGGAGAAGGTTAAGTATTGTCGGAACAAGGTGAAGTTGGTGCTAGGGGTTATGTG GGTGAGTAATTTCATGGTCGGAGAGCACAAACCGATAGGGAGGAGGTACACTTGTGACGGTTGTAGCAGTGGTGGGGAAGATCAACCTCCCCGTATTATT AGGTACACTTCTAAAGTTAAAAGGGTGGCTGACGTGAGAGGATGA
AA sequence Show only first row Show all	>Lus10030128 pacid=23172580 polypeptide=Lus10030128 locus=Lus10030128.g ID=Lus10030128.BGIv1.0 annot-version=v1.0 MHTPSISSLRHPPRDILVDVLARVAVTSAVDLVSPKLTCKALLDGFVDDYVYHHNDISKIPLMPWKINHQFVFDRCVTSKNPEALFRQGMVEFFGSLEIQ SDLANLMSAARLGHLESIYICDIVALCLGKEEEGMTLPQSTKGGGLRWSEKVKYCRNKVKLVLGVMWVSNFMVGEHKPIGRRYTCDGCSSGGEDQPPRII RYTSKVKRVADVRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67623			F-box family protein (.1)		Lus10030128 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031808 [exp]	1.4	0.9289
					Lus10021874 [exp]	1.7	0.9176
AT3G54310			unknown protein		Lus10004782 [exp]	4.8	0.9312
					Lus10010826 [exp]	10.6	0.8944
					Lus10011629 [exp]	11.8	0.8944
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10013767 [exp]	11.8	0.5415
					Lus10022108 [exp]	13.0	0.8944
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	14.0	0.8944
AT5G26150			protein kinase family protein ...		Lus10024998 [exp]	15.0	0.8944
					Lus10003272 [exp]	15.9	0.8944

Compare expression of checked genes

Lus10030128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.