Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57490 390 / 8e-139 Ribosomal protein S5 family protein (.1) AT2G41840 389 / 2e-138 Ribosomal protein S5 family protein (.1) AT1G58684 387 / 1e-137 Ribosomal protein S5 family protein (.1) AT1G58380 387 / 1e-137 XW6 Ribosomal protein S5 family protein (.1) AT1G59359 387 / 1e-137 Ribosomal protein S5 family protein (.1) AT1G58983 387 / 1e-137 Ribosomal protein S5 family protein (.1) AT2G33800 71 / 2e-14 EMB3113 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) AT1G64880 42 / 0.0003 Ribosomal protein S5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030130 [exp] 449 / 4e-162 AT2G41840 412 / 1e-146 Ribosomal protein S5 family protein (.1) Lus10014909 [exp] 444 / 4e-160 AT3G57490 414 / 9e-148 Ribosomal protein S5 family protein (.1) Lus10027358 [exp] 444 / 5e-160 AT3G57490 414 / 1e-147 Ribosomal protein S5 family protein (.1) Lus10009952 [exp] 442 / 9e-157 AT3G57490 410 / 7e-143 Ribosomal protein S5 family protein (.1) Lus10025445 [exp] 61 / 1e-10 AT2G33800 357 / 3e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Lus10015317 [exp] 60 / 2e-10 AT2G33800 358 / 2e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256800 [exp] 426 / 7e-153 AT1G58684 405 / 7e-144 Ribosomal protein S5 family protein (.1) Potri.006G052400 [exp] 409 / 2e-146 AT3G57490 417 / 7e-149 Ribosomal protein S5 family protein (.1) Potri.016G055000 [exp] 409 / 4e-146 AT2G41840 417 / 1e-148 Ribosomal protein S5 family protein (.1) Potri.011G053900 [exp] 67 / 4e-13 AT2G33800 246 / 1e-80 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Potri.004G045700 [exp] 64 / 6e-12 AT2G33800 316 / 6e-108 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Potri.013G076200 [exp] 40 / 0.001 AT1G64880 532 / 0.0 Ribosomal protein S5 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF03719 [flax] [poplar] Ribosomal_S5_C Ribosomal protein S5, C-terminal domain CL0196 [flax] [poplar] DSRM PF00333 [flax] [poplar] Ribosomal_S5 Ribosomal protein S5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030129 pacid=23172626 polypeptide=Lus10030129 locus=Lus10030129.g ID=Lus10030129.BGIv1.0 annot-version=v1.0 ATGGGTTCCGTGCACCAAGCTGGCCGTCTGGTGAAGGAAGGTAAGATCAAATCCTTGGAGCAGATCTACCTCCATTCCCTCCCAATCAAGGAGTACCAGA TCATCGACACTCTCGTCGGGCCTTCCCTCAAGGACGAGGTGATGAAAATCTCCCCTGTCCAGAAGCAGACTCGCGCCGGTCAGCCGACTCGATTCAAGGC GTTCGTCGTCGTCGGAGACGGGAATGGCCACGTCGGATTGGGTGTGAAGTGCTCCAAGGAAGTTGCTACTGCGATTCGTGGAGCAATCATCCTTGCTAAG CTCTCTGTTATCCCCGTGAAGAGGGGTTACTGGGGAAACAAGATCGGTTTGCCTCATACAGTGCCCTGCAAGGTGACTGGTAAGTGTGGTTCCGTTACTG TGAGGATGGTTCCTGCACCTCGTGGTGCTGGAATCGTTGCTGCTCGCGTGCCCAAGAAGGTCCTTCAGTTTGCTGGAATTGAGGATGTTTTCACTTCCTC CCGTGGCTCTACTAAGACCCTCGGCAACTTCGTCAAGGCTACCTTTGACTGTCTCCTGAAGACATACGGATTCTTGACTCCTGATTTCTGGAAGGATACC CGGTTCAGCAAATCTCCATTCCAAGAGTACACTGATCTATTGGGAAAGCCAACCAAGGCTCTTGTCCTTGAGGATGTTGAAAGGGTAGCAGAAGCTTGA
AA sequence Show only first row Show all	>Lus10030129 pacid=23172626 polypeptide=Lus10030129 locus=Lus10030129.g ID=Lus10030129.BGIv1.0 annot-version=v1.0 MGSVHQAGRLVKEGKIKSLEQIYLHSLPIKEYQIIDTLVGPSLKDEVMKISPVQKQTRAGQPTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAK LSVIPVKRGYWGNKIGLPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPDFWKDT RFSKSPFQEYTDLLGKPTKALVLEDVERVAEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57490			Ribosomal protein S5 family pr...		Lus10030129 [exp]	0	1
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10022022 [exp]	9.2	0.8220
AT2G44860			Ribosomal protein L24e family ...		Lus10009403 [exp]	18.4	0.8033
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	21.9	0.8218
AT4G15820			unknown protein		Lus10043415 [exp]	22.8	0.8202
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	23.3	0.7860
AT2G27710			60S acidic ribosomal protein f...		Lus10006270 [exp]	25.6	0.8203
AT3G49990			unknown protein		Lus10010625 [exp]	27.0	0.8147
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10016453 [exp]	29.5	0.8071
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	34.3	0.8151
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	41.5	0.7954

Compare expression of checked genes

Lus10030129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.