Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41840 414 / 2e-147 Ribosomal protein S5 family protein (.1) AT3G57490 413 / 3e-147 Ribosomal protein S5 family protein (.1) AT1G58684 410 / 8e-146 Ribosomal protein S5 family protein (.1) AT1G59359 410 / 8e-146 Ribosomal protein S5 family protein (.1) AT1G58983 410 / 8e-146 Ribosomal protein S5 family protein (.1) AT1G58380 409 / 1e-145 XW6 Ribosomal protein S5 family protein (.1) AT2G33800 72 / 3e-14 EMB3113 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) AT1G64880 42 / 0.0004 Ribosomal protein S5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014909 [exp] 468 / 8e-169 AT3G57490 414 / 9e-148 Ribosomal protein S5 family protein (.1) Lus10027358 [exp] 468 / 1e-168 AT3G57490 414 / 1e-147 Ribosomal protein S5 family protein (.1) Lus10009952 [exp] 467 / 1e-165 AT3G57490 410 / 7e-143 Ribosomal protein S5 family protein (.1) Lus10030129 [exp] 452 / 4e-163 AT3G57490 390 / 1e-138 Ribosomal protein S5 family protein (.1) Lus10025445 [exp] 62 / 9e-11 AT2G33800 357 / 3e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Lus10015317 [exp] 61 / 1e-10 AT2G33800 358 / 2e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256800 [exp] 451 / 2e-162 AT1G58684 405 / 7e-144 Ribosomal protein S5 family protein (.1) Potri.006G052400 [exp] 434 / 2e-155 AT3G57490 417 / 7e-149 Ribosomal protein S5 family protein (.1) Potri.016G055000 [exp] 434 / 2e-155 AT2G41840 417 / 1e-148 Ribosomal protein S5 family protein (.1) Potri.011G053900 [exp] 67 / 6e-13 AT2G33800 246 / 1e-80 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Potri.004G045700 [exp] 65 / 7e-12 AT2G33800 316 / 6e-108 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF03719 [flax] [poplar] Ribosomal_S5_C Ribosomal protein S5, C-terminal domain CL0196 [flax] [poplar] DSRM PF00333 [flax] [poplar] Ribosomal_S5 Ribosomal protein S5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030130 pacid=23172535 polypeptide=Lus10030130 locus=Lus10030130.g ID=Lus10030130.BGIv1.0 annot-version=v1.0 ATGTCTGACAGAGTAGCCGGCGGAGACCGACCACCACGCAGAGGGTTCGGCGGTCGTGGTGGAGACCGTGGAGGCAGAGGAGGACGCCGCCGCGGTGGCC GTCGTGAGGAGGAAGAAAAATGGGTTCCATGCACCAAGCTGGGTCGTCTGGTGAGGGAAGGTAAGATCAAATCCTTGGAGCAGATCTACCTCCACTCCCT CCCAATTAAGGAGTACCAGATCATCGATACTCTCGTCGGGCCTTCCCTCAAGGACGAGGTGATGAAAATCTCCCCTGTCCAGAAGCAGACTCGCGCCGGT CAGAGGACTCGATTCAAGGCGTTCGTCGTTGTCGGAGACGGGAATGGCCACGTCGGATTGGGCGTGAAGTGCTCCAAGGAAGTTGCTACTGCCATTCGTG GAGCAATCATCCTTGCTAAGCTCTCTGTTATCCCGGTGAGGAGGGGTTACTGGGGAAACAAGATCGGTTTGCCTCATACAGTGCCCTGCAAGGTGACTGG TAAGTGTGGTTCCGTTACTGTGAGGATGGTTCCTGCACCTCGTGGTGCTGGAATCGTTGCTGCTCGTGTGCCCAAGAAGGTCCTTCAGTTTGCTGGAATT GAGGATGTTTTCACTTCCTCCCGTGGCTCTACTAAGACCCTTGGCAACTTCGTCAAGGCTACTTTTGACTGTCTCCTGAAGACCTATGGGTTCTTGACGC CTGATTTCTGGAAGGATACACGCTTCAGCAAGTCTCCATTCCAAGAGTACACTGATCTGTTAGGAAAGCCAACTAAGGCTCTTGTCCTTGAGGATGTGGA GAGGGTAGCAGAAGCTTGA
AA sequence Show only first row Show all	>Lus10030130 pacid=23172535 polypeptide=Lus10030130 locus=Lus10030130.g ID=Lus10030130.BGIv1.0 annot-version=v1.0 MSDRVAGGDRPPRRGFGGRGGDRGGRGGRRRGGRREEEEKWVPCTKLGRLVREGKIKSLEQIYLHSLPIKEYQIIDTLVGPSLKDEVMKISPVQKQTRAG QRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGLPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGI EDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPDFWKDTRFSKSPFQEYTDLLGKPTKALVLEDVERVAEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41840			Ribosomal protein S5 family pr...		Lus10030130 [exp]	0	1
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	1.4	0.9675
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10018003 [exp]	2.4	0.9670
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	4.6	0.9664
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10020715 [exp]	5.7	0.9663
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10034395 [exp]	6.0	0.9567
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	6.5	0.9644
AT1G09640			Translation elongation factor ...		Lus10002537 [exp]	7.7	0.9604
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	8.1	0.9661
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031124 [exp]	8.5	0.9621
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	8.8	0.9614

Compare expression of checked genes

Lus10030130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.