Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04590 962 / 0 SIR sulfite reductase (.1) AT2G15620 93 / 2e-19 ATHNIR, NIR1 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009951 [exp] 1314 / 0 AT5G04590 1020 / 0.0 sulfite reductase (.1) Lus10027360 [exp] 1034 / 0 AT5G04590 985 / 0.0 sulfite reductase (.1) Lus10014907 [exp] 278 / 8e-83 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014059 [exp] 78 / 9e-15 AT2G15620 960 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052600 [exp] 1095 / 0 AT5G04590 1007 / 0.0 sulfite reductase (.1) Potri.001G257000 [exp] 1087 / 0 AT5G04590 1054 / 0.0 sulfite reductase (.1) Potri.004G140800 [exp] 89 / 3e-18 AT2G15620 1021 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03460 [flax] [poplar] NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain PF01077 [flax] [poplar] NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
Representative CDS sequence Show only first row Show all	>Lus10030131 pacid=23172600 polypeptide=Lus10030131 locus=Lus10030131.g ID=Lus10030131.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGACAACGATTGGAGCTGCCAACGCGGCAGTTGTCAAGGAACCAACCAAGATTCAGCGCCGTCGCTTCGACGGATTGACGAGGAGTTCTT CCAAGCATTTCAATGCGTTCTCGCTTCCTTCTTCCAGGCGCCCTTTCTTCATCAAGGCCGTTTCCACACCGGCGAAGCCTCCAGGGATTGCGACGAAGCG GAGCAAGGTCGAAATCATCAAAGAGAACAGCAATTTCATCAGGTACCCGCTCAACGAAGAGCTGTTAACAGATGCACCAAATGTTAACGAGAGTGCTGTA CAGCTCATCAAATTCCATGGGAGCTACCAACAGTATGATCGAGAGGAAAGAGGTGGTAGATCCTATTCCTTCATGCTCCGTACCAAAAACCCCTGTGGGA AAGTACCAAACAAGCTCTACTTAACGATGGACGACCTGGCCGATCAATTTGGAATTGGAACTCTACGCCTCACCACGAGGCAAACGTTCCAGCTCCATGG TGTTGTTAAAAAGGATCTCAAGACTGTGATGAGTAGCATCATTAACAGCATGGGATCCACCTTGGGAGCCTGTGGTGATCTGAACAGGAATGTTCTTGCA CCACCTGCTCCGCTTATGAGAGAAGACTATATGTTTGCTCAGAAGACTGCTGAGGACATTGCAGCGCTTCTTACTCCGCAGTCTGGATTCTACTATGACA TGTGGGTAGATGGGGAGAAGATCATGACTGCTGAAGAACCTCCTGAGGTTACGCAGGCTCGAAATGACAATTCTCATGGCACCAATTTTGCTGATTCCCC TGAACCCATTTATGGAACTCAGTTCTTGCCTAGGAAGTTCAAGGTTGCTGTCACTGTTCCTACTGATAACTCTGTGGATATTCTGACGAATGACATTGGT GTGGTTGTCGTTTCTGATGACGATGGGGTGCCTCAAGGGTTTAATATATATGTTGGTGGTGGTATGGGAAGAACACATAGGGTGGAGACCACTTTCCCCA GACTAGCTGAACCTTTAGGTTATGTGCCCAAAGAGGACATCTTGTATGCAATTAAAGCTATTGTTGTTACTCAACGGGAGAACGGCAGGAGAGACGATCG GAGATACAGTAGAATGAAATATTTGATCGACTCCTGGGGGATCGAGAAGTTCAGAAGTGAAGCTGAGAAATACTACGGAAAGAAATTCGAACCCTTCCGC GAGTTGCCCCAGTGGGAATTTAAAGGTCACTTAGGATGGCAGGAACAGGGTGATGGTAAATGGTTCTATGGGCTCCATGTTGACAATGGCCGTGTTGGAG GGAAAACAAAGAAGGCATTGAGAGAGGTTATAGAGAAGTACAACTTGGATGTTCGTATCACGCCCAACCAGAACATAATTCTATGTGGAATTACAAAATC ATGGAAGCGCTCTATCACCATGACACTAGCACAGGCAGGCTTACTGCAACCTAAATATGTAGACGCGCTCAACTTGACAGCCATGGCATGTCCAGCGTTC CCTCTTTGCCCATTGGCAATAACTGAAGCTGAGCGTGGGATACCTGATATCCTGAAACGTGTTAGAGCTGTGTTTGAGAAGGTTGGTCTGAAGTACAGTG ATTCTGTGGTAATTAGAGTAACTGGGTGCCCTAATGGCTGTGCTAGACCATACATGGCTGAACTTGGACTGGTTGGCGACGGTCCGAATAGTTACCAGAT CTGGCTAGGAGGAGCTCCCAACCAAACTGTGTTGGCTAAAACATTCATGAACAAGGTTAAGGTTCAGGACCTTGAAACTGTCTTTGAACCTCTTTTCTAT CATTGGAAACGATTAAGGAAATCAGGGGAGTCATTTGGTGAATTTGCAAACCGAAAGGGATTTGAGACATTGCAAGAGTGGGTAGAGAAATGGGAAGGAA TTGAAGCTGCACCAAAAAGGAACGTGTTGAGGCTGTTCTCGGACAAAGATACATTCAAGAAGATGGATGAACTAGCAAAGTTGCAGAACAAGACTGCTCA TCAGTTGGCCATGGAAGTCCTTCGCAATTACGTCGCAGCTGAGGAGAACGGTAAAGCTGAATGA
AA sequence Show only first row Show all	>Lus10030131 pacid=23172600 polypeptide=Lus10030131 locus=Lus10030131.g ID=Lus10030131.BGIv1.0 annot-version=v1.0 MAAATTIGAANAAVVKEPTKIQRRRFDGLTRSSSKHFNAFSLPSSRRPFFIKAVSTPAKPPGIATKRSKVEIIKENSNFIRYPLNEELLTDAPNVNESAV QLIKFHGSYQQYDREERGGRSYSFMLRTKNPCGKVPNKLYLTMDDLADQFGIGTLRLTTRQTFQLHGVVKKDLKTVMSSIINSMGSTLGACGDLNRNVLA PPAPLMREDYMFAQKTAEDIAALLTPQSGFYYDMWVDGEKIMTAEEPPEVTQARNDNSHGTNFADSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIG VVVVSDDDGVPQGFNIYVGGGMGRTHRVETTFPRLAEPLGYVPKEDILYAIKAIVVTQRENGRRDDRRYSRMKYLIDSWGIEKFRSEAEKYYGKKFEPFR ELPQWEFKGHLGWQEQGDGKWFYGLHVDNGRVGGKTKKALREVIEKYNLDVRITPNQNIILCGITKSWKRSITMTLAQAGLLQPKYVDALNLTAMACPAF PLCPLAITEAERGIPDILKRVRAVFEKVGLKYSDSVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGAPNQTVLAKTFMNKVKVQDLETVFEPLFY HWKRLRKSGESFGEFANRKGFETLQEWVEKWEGIEAAPKRNVLRLFSDKDTFKKMDELAKLQNKTAHQLAMEVLRNYVAAEENGKAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04590		SIR	sulfite reductase (.1)		Lus10030131 [exp]	0	1
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	1.0	0.9647
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	2.8	0.9497
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	4.2	0.9343
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	4.5	0.9398
AT5G37190		CIP4	COP1-interacting protein 4 (.1...		Lus10006453 [exp]	4.6	0.9322
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	5.2	0.9438
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10022737 [exp]	6.3	0.9222
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10036370 [exp]	8.1	0.9213
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	8.3	0.9213
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10026519 [exp]	9.5	0.9385

Compare expression of checked genes

Lus10030131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.