Plant FIBer expression Database

Lus10030132 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51400 71 / 4e-17 Photosystem II 5 kD protein (.1)
AT3G21055 62 / 1e-13 PSBTN photosystem II subunit T (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009950
[exp]
137 / 1e-43 AT1G51400 94 / 3e-26 Photosystem II 5 kD protein (.1)
Lus10027359
[exp]
74 / 2e-18 AT3G21055 81 / 3e-21 photosystem II subunit T (.1)
Lus10014908
[exp]
69 / 2e-16 AT1G51400 81 / 2e-21 Photosystem II 5 kD protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G256900
[exp]
87 / 2e-23 AT1G51400 91 / 3e-25 Photosystem II 5 kD protein (.1)
Potri.009G052500
[exp]
86 / 3e-23 AT1G51400 96 / 3e-27 Photosystem II 5 kD protein (.1)
PFAM info
Representative CDS sequence
>Lus10030132 pacid=23172633 polypeptide=Lus10030132 locus=Lus10030132.g ID=Lus10030132.BGIv1.0 annot-version=v1.0
ATGGCGTCGATGACAATGGCTGCATCTTTCTCATCCACCATGATTGCTGCTAAGCCCATCACAGCTCCGCGGAGAGGAATGTTTGTCGTGGCCAAAGCAT
CAAATGAAATGAAGGCAGAGAATAAGGCAGAGAGCAGCAGCAACAATGGAAGGAGGGATTTGATGTTTGGAGCAGTAGCAGCAGCAGCTTACTCCATTGC
TAGCTTTGCAATGGCTGATGAGCCCAAGAGAGGAACCCCTGAGGCCAAGAAGAAGTACGCTCCTATATGCGTCACAATGCCTACTGCTCGCATCTGTCGC
AACTGA
AA sequence
>Lus10030132 pacid=23172633 polypeptide=Lus10030132 locus=Lus10030132.g ID=Lus10030132.BGIv1.0 annot-version=v1.0
MASMTMAASFSSTMIAAKPITAPRRGMFVVAKASNEMKAENKAESSSNNGRRDLMFGAVAAAAYSIASFAMADEPKRGTPEAKKKYAPICVTMPTARICR
N

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G51400 Photosystem II 5 kD protein (.... Lus10030132
[exp]
0 1
AT1G51400 Photosystem II 5 kD protein (.... Lus10009950
[exp]
1.4 0.9597
AT3G08940 LHCB4.2 light harvesting complex photo... Lus10027786
[exp]
2.8 0.9454
AT2G30570 PSBW photosystem II reaction center... Lus10033862
[exp]
5.7 0.9454
AT1G15820 CP24, LHCB6 light harvesting complex photo... Lus10015831
[exp]
8.5 0.9285
AT1G64355 unknown protein Lus10001903
[exp]
8.8 0.9105
AT1G08380 PSAO photosystem I subunit O (.1) Lus10013310
[exp]
8.9 0.9435
AT2G06520 PSBX photosystem II subunit X (.1) Lus10026458
[exp]
13.0 0.9213
AT2G30570 PSBW photosystem II reaction center... Lus10024858
[exp]
13.5 0.9292
AT4G05180 PSII-Q, PSBQ, P... photosystem II subunit Q-2 (.1... Lus10007627
[exp]
14.0 0.9385
AT1G79040 PSBR photosystem II subunit R (.1) Lus10026205
[exp]
15.1 0.9371

Lus10030132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.