Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01870 52 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009946 [exp] 254 / 6e-88 AT2G01870 73 / 1e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G257400 [exp] 79 / 1e-18 AT2G01870 90 / 8e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030135 pacid=23172555 polypeptide=Lus10030135 locus=Lus10030135.g ID=Lus10030135.BGIv1.0 annot-version=v1.0 ATGCAAACTTCTTCATCTCCACGGCTTCCTCTTCTGTCCAAATACTACAAAACTTCAATCCATGGAACTGTAAACAGAGCAATCCCAGGTGCAGGAAGAG GAACAAGGCCTTCTTGGACTGTTAATGCTGAAAACAACTCAAAGCCACAACAACAGCAACAACAGTATGAGATAGACCAAGATCAAGCCAAGCAAGCTCT TCAAAGGCTCGACCAACAGCTCCAACAACTCTCCACTAAGCAAATCGCCCCTCCAAAGCTCAAAGCGTCAGATGAACAGATTATAAGGGAACAGATGAGA CAAGAATTGGTAGAAATTCCAGGGTCTGCCGTAGCGTATGGGGTGGCAGCTCTGTTTGCATTCGCTATATTCTATAATGTACTCTTCCTAACGGTCATAA AACCAGCCATTGATGGACCTGAGCTGATCCCCGGCGCAACCATCAGGGTCGAAATGGAACGGTACGGTACTAGAATTTTGCAGCTGCCCTTCCCAGATGG CTTCCTGTAA
AA sequence Show only first row Show all	>Lus10030135 pacid=23172555 polypeptide=Lus10030135 locus=Lus10030135.g ID=Lus10030135.BGIv1.0 annot-version=v1.0 MQTSSSPRLPLLSKYYKTSIHGTVNRAIPGAGRGTRPSWTVNAENNSKPQQQQQQYEIDQDQAKQALQRLDQQLQQLSTKQIAPPKLKASDEQIIREQMR QELVEIPGSAVAYGVAALFAFAIFYNVLFLTVIKPAIDGPELIPGATIRVEMERYGTRILQLPFPDGFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01870			unknown protein		Lus10030135 [exp]	0	1
AT3G53470			unknown protein		Lus10019901 [exp]	1.4	0.9369
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	2.4	0.9519
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10019793 [exp]	3.2	0.9308
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	4.6	0.9232
AT3G14470			NB-ARC domain-containing disea...		Lus10004126 [exp]	4.9	0.9238
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10029979 [exp]	5.7	0.9355
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	7.5	0.8998
AT3G05410			Photosystem II reaction center...		Lus10004498 [exp]	8.2	0.9320
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10025202 [exp]	8.8	0.8926
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	9.9	0.9142

Compare expression of checked genes

Lus10030135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.