Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20920 486 / 6e-173 translocation protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009945 [exp] 715 / 0 AT3G20920 506 / 0.0 translocation protein-related (.1.2) Lus10014906 [exp] 551 / 0 AT3G20920 501 / 3e-179 translocation protein-related (.1.2) Lus10027362 [exp] 545 / 0 AT3G20920 498 / 4e-178 translocation protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G052800 [exp] 530 / 0 AT3G20920 451 / 5e-159 translocation protein-related (.1.2) Potri.001G257500 [exp] 523 / 0 AT3G20920 465 / 1e-164 translocation protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03839 [flax] [poplar] Sec62 Translocation protein Sec62
Representative CDS sequence Show only first row Show all	>Lus10030136 pacid=23172573 polypeptide=Lus10030136 locus=Lus10030136.g ID=Lus10030136.BGIv1.0 annot-version=v1.0 ATGCGAGAGATGAAGAAACCTGGAGGAGCTGACAAGAAAAGGGTTCGAAGATCGTCTGCTGCGGTACAGAATGGCTCCCGAGATCTCAATTCAGATTCTC CGCCTAGGTTTCTGCAATTGCTTCCGGTTGGCTTTCAGAAACAAGCCGCGAAGAAAGATGTGTTCCAGTTGTTTGCTGAGAAGGTGAGAGACCACAAGGA TTTAGTTTCTCGTTGGGCTGTTCTGCAGGAAACACGTGTGGAATATGTCAGGGGGAAAGACTTCGTTAGTTTCCTGAAAAATCATCCAGAGGTGAAAGAG GTACTAGACTCTGGAAAGAACTTGGAGGTTGAAGAAATTGCCAATACTCTCTTGAGCAAGAACCTTCTGGTGCGTTGTGACCGTGTCGTGAAAACAATTC GTCCTGGGAAGAAAAAGTTATCAACCTGGCCAGCACATTTAGAGATATTCCCGGATCAAGTTTTTTCAGATACCGATGCATTTTTCGCATGGGCATTTGT GAAACGAAGGCCACTTTGGCAAACGCTTCTCTCGTTCTTTTGGCCTGTCTTGACTCTGGCAATATGCTTGTTTCCTGTATATCCTCACCGGTGCAAGCTT TTGATTCTCTACTCATGTGCTGGTGTCCTCTTGCTTATTCTCTCGGTACTTCTGTTGAGAGCCACTGTCTTTGGTGCTTTATATGTCCTTCTAGGAAAGA GAGTATGGTTCTTCCCTAACATCCTGGCTGAAGAAGCTACATTGCGAGAATTGTTCCGGTTCTGGCCCCAGAAGGACGAGGAGGACCGCCCTAAGTGGAC AACAAGGCTTTTGTATACGGTTGTAGCCTTGTCAATTATATTGCTGCTAAGACACCATGCGCCAGATGAAAAAGCTCGAGCTAGGTATCAGAAGAGGATG TCCAACATTATCGACGATGTGCTGGAGTGGTCGCCAAAGCTAGCGTTATCCGGGTTCATGGAGAAGCCACAGGATGTGGCAAATGTGACCGATTCAGGCA ATGATTATGCCGATGGTGGTAGTGAAGCACATTTGGGGCATACACATGCAGTTGAGGATCCCGAAGAAGAAGCGGTCTTGCCCGAGGAAGTAGGCACAGT GGATAGTAATGAAGAAGACAGGAGCAGTCATGAGAATGGAGGAGCAGAAAGCTCTGATCATTTATAA
AA sequence Show only first row Show all	>Lus10030136 pacid=23172573 polypeptide=Lus10030136 locus=Lus10030136.g ID=Lus10030136.BGIv1.0 annot-version=v1.0 MREMKKPGGADKKRVRRSSAAVQNGSRDLNSDSPPRFLQLLPVGFQKQAAKKDVFQLFAEKVRDHKDLVSRWAVLQETRVEYVRGKDFVSFLKNHPEVKE VLDSGKNLEVEEIANTLLSKNLLVRCDRVVKTIRPGKKKLSTWPAHLEIFPDQVFSDTDAFFAWAFVKRRPLWQTLLSFFWPVLTLAICLFPVYPHRCKL LILYSCAGVLLLILSVLLLRATVFGALYVLLGKRVWFFPNILAEEATLRELFRFWPQKDEEDRPKWTTRLLYTVVALSIILLLRHHAPDEKARARYQKRM SNIIDDVLEWSPKLALSGFMEKPQDVANVTDSGNDYADGGSEAHLGHTHAVEDPEEEAVLPEEVGTVDSNEEDRSSHENGGAESSDHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20920			translocation protein-related ...		Lus10030136 [exp]	0	1
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	1.0	0.9385
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10030358 [exp]	3.0	0.9074
AT1G25420			Regulator of Vps4 activity in ...		Lus10041442 [exp]	4.9	0.9084
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036929 [exp]	5.9	0.9049
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	6.5	0.9035
AT2G25280			unknown protein		Lus10001950 [exp]	7.5	0.8997
AT5G11970			Protein of unknown function (D...		Lus10017155 [exp]	7.7	0.9066
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	11.4	0.8968
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	12.8	0.8941
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	14.4	0.8995

Compare expression of checked genes

Lus10030136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.