Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20890 316 / 2e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G66010 242 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G48840 42 / 0.0001 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G45100 43 / 0.0002 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G41690 42 / 0.0002 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009943 [exp] 499 / 0 AT3G20890 328 / 9e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009942 [exp] 421 / 8e-150 AT3G20890 313 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030140 [exp] 407 / 5e-145 AT3G20890 300 / 8e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258000 [exp] 395 / 3e-140 AT3G20890 357 / 6e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G053200 [exp] 381 / 7e-135 AT3G20890 353 / 1e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G101200 [exp] 261 / 2e-87 AT5G66010 344 / 2e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030139 pacid=23172536 polypeptide=Lus10030139 locus=Lus10030139.g ID=Lus10030139.BGIv1.0 annot-version=v1.0 ATGTTTCTCAGAGGGTCGATCATTGAGGCTCTAACAAGGCAGTTTCTCCTTGAACGCCTATATGGTGACGGTGCTGATTGCCGTGAAATGGGTGCAAAAC GTCAGCGGATGCTTGAACAAACTCCTTCATATTTTGGAGCTACCCCAGGGACAAGCTTCATGCATAGTCAACCAACTTATGCTTACGTCGGCCAACCTCA AACTTTCCCAGTGGTTCGTCTTCGCGGCCTGCCCTTTGATTGTACAGACACTGACGTAGTGGAATTCTTCCAGGGACTAAACATAGTCGATATTCTATTC GTCCACAAGGGTGGAAAATTCAGCGGTGAAGCATTTTGCGTACTTGGCTTCCCAATTCAAGTCGACTTTGCCCTGCAACGAAATCGGCAGAACATCGGCA GGAGATACGTTGAGGTGTTCAGAAGCACGAGGCAAGACTATTACAAGGCGATAGCAGGCGAGGTTTCAGAATATCGCGGAAGTTCACCGAAACGGACTTC CACACGAGCAAAATCGTACGATGAGGGGAAGGAATCGGCAGAGCATACAGGGGTGTTGCGGTTGAGGGGACTGCCGTTTTCGGCAGGGAAGGATGATATA ATAGAGTTCTTCAAAGACTATGCAGCTTTGTCGAAGAAATCGATCCATATAATGGTGAATTATGAGGGTAGAGCGACTGGGGACGCGTTTGTGGAGTTTG CGAGTGCTGAATATTCGAAGGCAGCGATGGGGAAAGATAGAAAGTCATTGGGGAGTCGTTACATTGAGTTGTTCCCTTCGTCGATGGAAGAGTTGCAAGA GGCTTTTGCCAGAGGGCGTTAG
AA sequence Show only first row Show all	>Lus10030139 pacid=23172536 polypeptide=Lus10030139 locus=Lus10030139.g ID=Lus10030139.BGIv1.0 annot-version=v1.0 MFLRGSIIEALTRQFLLERLYGDGADCREMGAKRQRMLEQTPSYFGATPGTSFMHSQPTYAYVGQPQTFPVVRLRGLPFDCTDTDVVEFFQGLNIVDILF VHKGGKFSGEAFCVLGFPIQVDFALQRNRQNIGRRYVEVFRSTRQDYYKAIAGEVSEYRGSSPKRTSTRAKSYDEGKESAEHTGVLRLRGLPFSAGKDDI IEFFKDYAALSKKSIHIMVNYEGRATGDAFVEFASAEYSKAAMGKDRKSLGSRYIELFPSSMEELQEAFARGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030139 [exp]	0	1
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	1.7	0.8776
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	6.0	0.8146
AT1G16210			unknown protein		Lus10022649 [exp]	6.2	0.8387
AT2G35900			unknown protein		Lus10021249 [exp]	6.9	0.8251
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011187 [exp]	6.9	0.8148
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001696 [exp]	7.7	0.8070
					Lus10039242 [exp]	7.7	0.7316
AT1G61040		VIP5	vernalization independence 5, ...		Lus10018476 [exp]	8.9	0.8186
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039659 [exp]	9.2	0.8237
AT2G20940			Protein of unknown function (D...		Lus10034474 [exp]	11.4	0.7713

Compare expression of checked genes

Lus10030139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.